AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: human MGYG000000946
  • AAI clade 2 medoid: human MGYG000000019
  • AAI clade 3 medoid: human MGYG000003370
  • AAI clade 4 medoid: 3300027323 37
  • AAI clade 5 medoid: human MGYG000004185
  • AAI clade 6 medoid: human MGYG000001010
  • AAI clade 7 medoid: wastewater GEMS 3300025861 51
  • AAI clade 8 medoid: human MGYG000002603
  • AAI clade 9 medoid: 3300024953 8
  • AAI clade 10 medoid: 3300017423 5
  • AAI clade 11 medoid: pig GCA 946405745 1
  • AAI clade 12 medoid: 3300006192 20
  • AAI clade 13 medoid: pig LW1 s150947 bin 23
  • AAI clade 14 medoid: dog Snoopy p1 metabat2 high PE 009
  • AAI clade 15 medoid: pig MGYG000302081
  • AAI clade 16 medoid: human MGYG000000545
    • AAI clade 16-1 medoid: human MGYG000000545
    • AAI clade 16-2 medoid: ruminant GCA 015057715 1
    • AAI clade 16-3 medoid: human MGYG000000194
    • AAI clade 16-4 medoid: human MGYG000003326
    • AAI clade 16-5 medoid: human MGYG000000065
    • AAI clade 16-6 medoid: chicken MGYG000309273
    • AAI clade 16-7 medoid: human MGYG000003147
    • AAI clade 16-8 medoid: human MGYG000000076
    • AAI clade 16-9 medoid: human MGYG000000060
    • AAI clade 16-10 medoid: human MGYG000004403
    • AAI clade 16-11 medoid: human MGYG000001862
    • AAI clade 16-12 medoid: pig MGYG000301125
      • AAI clade 16-12-1 medoid: pig MGYG000301125
        • AAI clade 16-12-1-1 medoid: human MGYG000002279
        • AAI clade 16-12-1-2 medoid: cat SAMEA3387452 metabat2 high PE 017
        • AAI clade 16-12-1-3 medoid: human MGYG000001687
        • AAI clade 16-12-1-4 medoid: chicken DSTMC04003 metabat2 high PE 016
        • AAI clade 16-12-1-5 medoid: chicken GCA 019115645 1
        • AAI clade 16-12-1-6 medoid: chicken MGYG000308317
        • AAI clade 16-12-1-7 medoid: chicken MGYG000317661
        • AAI clade 16-12-1-8 medoid: human MGYG000001303
        • AAI clade 16-12-1-9 medoid: chicken GCA 018716485 1
        • AAI clade 16-12-1-10 medoid: chicken GCA 019114065 1
        • AAI clade 16-12-1-11 medoid: chicken GCA 019118525 1
        • AAI clade 16-12-1-12 medoid: chicken GCA 019119285 1
        • AAI clade 16-12-1-13 medoid: chicken MGYG000314976
        • AAI clade 16-12-1-14 medoid: human MGYG000000067
        • AAI clade 16-12-1-15 medoid: human MGYG000000146
        • AAI clade 16-12-1-16 medoid: human MGYG000000165
        • AAI clade 16-12-1-17 medoid: human MGYG000000206
        • AAI clade 16-12-1-18 medoid: human MGYG000000586
        • AAI clade 16-12-1-19 medoid: human MGYG000000987
        • AAI clade 16-12-1-20 medoid: human MGYG000001607
        • AAI clade 16-12-1-21 medoid: human MGYG000001710
        • AAI clade 16-12-1-22 medoid: human MGYG000002018
        • AAI clade 16-12-1-23 medoid: human MGYG000004263
        • AAI clade 16-12-1-24 medoid: human MGYG000004572
        • AAI clade 16-12-1-25 medoid: human MGYG000004581
        • AAI clade 16-12-1-26 medoid: human MGYG000004697
        • AAI clade 16-12-1-27 medoid: pig LW1 s150822 bin 20
        • AAI clade 16-12-1-28 medoid: pig F4993 bin 15
        • AAI clade 16-12-1-29 medoid: pig F5244 bin 32
        • AAI clade 16-12-1-30 medoid: pig F5457 bin 33
        • AAI clade 16-12-1-31 medoid: pig GCA 016295505 1
        • AAI clade 16-12-1-32 medoid: pig LW2 s126610 bin 36
          1 dataset: pig LW2 s126610 bin 36 (AAI: 100.0%)
        • AAI clade 16-12-1-33 medoid: pig MGYG000300901
        • AAI clade 16-12-1-34 medoid: pig MGYG000300986
        • AAI clade 16-12-1-35 medoid: pig MGYG000301125
        • AAI clade 16-12-1-36 medoid: pig MGYG000301238
        • AAI clade 16-12-1-37 medoid: pig QHF6 unmapped bin 427
        • AAI clade 16-12-1-38 medoid: pig QHF6 unmapped bin 530
        • AAI clade 16-12-1-39 medoid: pig QHF6 unmapped bin 757
        • AAI clade 16-12-1-40 medoid: pig S129704B bin 35
        • AAI clade 16-12-1-41 medoid: pig S95012B bin 11
      • AAI clade 16-12-2 medoid: dog Bissell p2 metabat2 high PE 001
    • AAI clade 16-13 medoid: human MGYG000001564
    • AAI clade 16-14 medoid: human MGYG000000200
    • AAI clade 16-15 medoid: chicken GCA 019120115 1
    • AAI clade 16-16 medoid: human MGYG000001964
    • AAI clade 16-17 medoid: pig Tibetan s3800 12F bin 25
    • AAI clade 16-18 medoid: human MGYG000003552
    • AAI clade 16-19 medoid: human MGYG000003597
    • AAI clade 16-20 medoid: human MGYG000002609
    • AAI clade 16-21 medoid: human MGYG000000018
    • AAI clade 16-22 medoid: human MGYG000001183
    • AAI clade 16-23 medoid: pig MGYG000301798
  • AAI clade 17 medoid: human MGYG000003895
  • AAI clade 18 medoid: chicken MGYG000313561
  • AAI clade 19 medoid: 3300024912 1
  • AAI clade 20 medoid: human MGYG000002619
  • AAI clade 21 medoid: human MGYG000002428
  • AAI clade 22 medoid: 3300027805 13
  • AAI clade 23 medoid: chicken MGYG000314833
  • AAI clade 24 medoid: wastewater GEMS 3300027794 31
  • AAI clade 25 medoid: human MGYG000004406
  • AAI clade 26 medoid: pig MGYG000301788
  • AAI clade 27 medoid: 3300027834 52
  • AAI clade 28 medoid: 3300020389 13
  • AAI clade 29 medoid: 3300027835 270
  • AAI clade 30 medoid: 3300013004 97
  • AAI clade 31 medoid: 3300025065 6
  • AAI clade 32 medoid: human MGYG000004800
  • AAI clade 33 medoid: ruminant GCA 015060255 1
  • AAI clade 34 medoid: chicken GCA 019115885 1
  • AAI clade 35 medoid: pig SAMEA3663026 metabat2 high PE 017
  • AAI clade 36 medoid: human MGYG000000998
  • AAI clade 37 medoid: 3300012919 27
  • AAI clade 38 medoid: 3300027851 42
  • AAI clade 39 medoid: wastewater ye ASMAG566