AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

• AAI clade 1 medoid: human MGYG000000946
• AAI clade 2 medoid: human MGYG000000019
• AAI clade 3 medoid: human MGYG000003370
• AAI clade 4 medoid: 3300027323 37
• AAI clade 5 medoid: human MGYG000004185
• AAI clade 6 medoid: human MGYG000001010
• AAI clade 7 medoid: wastewater GEMS 3300025861 51
• AAI clade 8 medoid: human MGYG000002603
• AAI clade 9 medoid: 3300024953 8
• AAI clade 10 medoid: 3300017423 5
• AAI clade 11 medoid: pig GCA 946405745 1
• AAI clade 12 medoid: 3300006192 20
• AAI clade 13 medoid: pig LW1 s150947 bin 23
• AAI clade 14 medoid: dog Snoopy p1 metabat2 high PE 009
• AAI clade 15 medoid: pig MGYG000302081
• AAI clade 16 medoid: human MGYG000000545
• AAI clade 17 medoid: human MGYG000003895
• AAI clade 18 medoid: chicken MGYG000313561
• AAI clade 19 medoid: 3300024912 1
• AAI clade 20 medoid: human MGYG000002619
• AAI clade 21 medoid: human MGYG000002428
• AAI clade 22 medoid: 3300027805 13
• AAI clade 23 medoid: chicken MGYG000314833
• AAI clade 24 medoid: wastewater GEMS 3300027794 31
• AAI clade 25 medoid: human MGYG000004406
• AAI clade 26 medoid: pig MGYG000301788
• AAI clade 27 medoid: 3300027834 52
• AAI clade 28 medoid: 3300020389 13
• AAI clade 29 medoid: 3300027835 270
• AAI clade 30 medoid: 3300013004 97
• AAI clade 31 medoid: 3300025065 6
• AAI clade 32 medoid: human MGYG000004800
• AAI clade 33 medoid: ruminant GCA 015060255 1
• AAI clade 34 medoid: chicken GCA 019115885 1
  • AAI clade 34-1 medoid: pig S127912A bin 37
  • AAI clade 34-2 medoid: human MGYG000003818
  • AAI clade 34-3 medoid: human MGYG000000399
  • AAI clade 34-4 medoid: chicken GCA 019113275 1
  • AAI clade 34-5 medoid: chicken MGYG000317399
  • AAI clade 34-6 medoid: chicken GCA 019115885 1
  • AAI clade 34-7 medoid: pig Tibetan s3800 19M bin 22
  • AAI clade 34-8 medoid: chicken MGYG000311580
  • AAI clade 34-9 medoid: chicken MGYG000317413
  • AAI clade 34-10 medoid: human MGYG000003216
  • AAI clade 34-11 medoid: human MGYG000001853
  • AAI clade 34-12 medoid: pig Duroc Low8 bin 40
  • AAI clade 34-13 medoid: human MGYG000000527
  • AAI clade 34-14 medoid: human MGYG000003849
  • AAI clade 34-15 medoid: human MGYG000000751
  • AAI clade 34-16 medoid: chicken MGYG000317429
  • AAI clade 34-17 medoid: human MGYG000003549
  • AAI clade 34-18 medoid: human MGYG000000749
  • AAI clade 34-19 medoid: chicken MGYG000310747
  • AAI clade 34-20 medoid: human MGYG000003459
  • AAI clade 34-21 medoid: ruminant GCA 015055655 1
  • AAI clade 34-22 medoid: chicken MGYG000316765
• AAI clade 35 medoid: pig SAMEA3663026 metabat2 high PE 017
• AAI clade 36 medoid: human MGYG000000998
• AAI clade 37 medoid: 3300012919 27
• AAI clade 38 medoid: 3300027851 42
• AAI clade 39 medoid: wastewater ye ASMAG566