AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

• AAI clade 1 medoid: human MGYG000000946
• AAI clade 2 medoid: human MGYG000000019
• AAI clade 3 medoid: human MGYG000003370
• AAI clade 4 medoid: 3300027323 37
• AAI clade 5 medoid: human MGYG000004185
• AAI clade 6 medoid: human MGYG000001010
• AAI clade 7 medoid: wastewater GEMS 3300025861 51
• AAI clade 8 medoid: human MGYG000002603
• AAI clade 9 medoid: 3300024953 8
• AAI clade 10 medoid: 3300017423 5
• AAI clade 11 medoid: pig GCA 946405745 1
• AAI clade 12 medoid: 3300006192 20
  • AAI clade 12-1 medoid: dog GCA 022496395 1
  • AAI clade 12-2 medoid: dog GCA 022496315 1
  • AAI clade 12-3 medoid: human MGYG000003125
  • AAI clade 12-4 medoid: 3300007346 9
  • AAI clade 12-5 medoid: 3300027760 22
  • AAI clade 12-6 medoid: 3300026134 5
  • AAI clade 12-7 medoid: wastewater ye ASMAG2005
  • AAI clade 12-8 medoid: chicken DGYFI06202 metabat2 high PE 029
  • AAI clade 12-9 medoid: chicken MGYG000312802
  • AAI clade 12-10 medoid: human MGYG000003811
  • AAI clade 12-11 medoid: chicken GCA 014837045 1
  • AAI clade 12-12 medoid: 3300008012 19
  • AAI clade 12-13 medoid: 3300027231 11
  • AAI clade 12-14 medoid: 3300003375 5
  • AAI clade 12-15 medoid: 3300027983 69
  • AAI clade 12-16 medoid: 3300014957 3
  • AAI clade 12-17 medoid: chicken GCA 014836555 1
  • AAI clade 12-18 medoid: 3300027976 64
  • AAI clade 12-19 medoid: wastewater GEMS 3300012990 10
  • AAI clade 12-20 medoid: 3300027760 62
  • AAI clade 12-21 medoid: 3300010158 20
  • AAI clade 12-22 medoid: 3300027746 62
  • AAI clade 12-23 medoid: 3300024356 12
  • AAI clade 12-24 medoid: 3300020397 14
  • AAI clade 12-25 medoid: 3300027848 89
  • AAI clade 12-26 medoid: 3300025183 2
  • AAI clade 12-27 medoid: 3300027415 2
  • AAI clade 12-28 medoid: 3300027963 72
  • AAI clade 12-29 medoid: 3300020429 15
  • AAI clade 12-30 medoid: chicken MGYG000320897
  • AAI clade 12-31 medoid: chicken GCA 020742595 1
  • AAI clade 12-32 medoid: human MGYG000001411
  • AAI clade 12-33 medoid: chicken DHCMJ07802 metabat2 low PE 015
  • AAI clade 12-34 medoid: human MGYG000001408
  • AAI clade 12-35 medoid: chicken GCA 020741275 1
  • AAI clade 12-36 medoid: chicken GCA 019115985 1
  • AAI clade 12-37 medoid: wastewater singleton GCA 016710385 1 ASM1671038v1 genomic
  • AAI clade 12-38 medoid: chicken MGYG000308330
  • AAI clade 12-39 medoid: chicken GCA 020744015 1
  • AAI clade 12-40 medoid: human MGYG000002888
  • AAI clade 12-41 medoid: human MGYG000000112
  • AAI clade 12-42 medoid: human MGYG000002897
  • AAI clade 12-43 medoid: human MGYG000003113
  • AAI clade 12-44 medoid: human MGYG000000642
  • AAI clade 12-45 medoid: human MGYG000004883
  • AAI clade 12-46 medoid: human MGYG000001287
  • AAI clade 12-47 medoid: human MGYG000003800
• AAI clade 13 medoid: pig LW1 s150947 bin 23
• AAI clade 14 medoid: dog Snoopy p1 metabat2 high PE 009
• AAI clade 15 medoid: pig MGYG000302081
• AAI clade 16 medoid: human MGYG000000545
• AAI clade 17 medoid: human MGYG000003895
• AAI clade 18 medoid: chicken MGYG000313561
• AAI clade 19 medoid: 3300024912 1
• AAI clade 20 medoid: human MGYG000002619
• AAI clade 21 medoid: human MGYG000002428
• AAI clade 22 medoid: 3300027805 13
• AAI clade 23 medoid: chicken MGYG000314833
• AAI clade 24 medoid: wastewater GEMS 3300027794 31
• AAI clade 25 medoid: human MGYG000004406
• AAI clade 26 medoid: pig MGYG000301788
• AAI clade 27 medoid: 3300027834 52
• AAI clade 28 medoid: 3300020389 13
• AAI clade 29 medoid: 3300027835 270
• AAI clade 30 medoid: 3300013004 97
• AAI clade 31 medoid: 3300025065 6
• AAI clade 32 medoid: human MGYG000004800
• AAI clade 33 medoid: ruminant GCA 015060255 1
• AAI clade 34 medoid: chicken GCA 019115885 1
• AAI clade 35 medoid: pig SAMEA3663026 metabat2 high PE 017
• AAI clade 36 medoid: human MGYG000000998
• AAI clade 37 medoid: 3300012919 27
• AAI clade 38 medoid: 3300027851 42
• AAI clade 39 medoid: wastewater ye ASMAG566