AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
-
AAI clade 1
medoid: human MGYG000000946
-
AAI clade 2
medoid: human MGYG000000019
-
AAI clade 3
medoid: human MGYG000003370
-
AAI clade 4
medoid: 3300027323 37
-
AAI clade 5
medoid: human MGYG000004185
-
AAI clade 6
medoid: human MGYG000001010
-
AAI clade 7
medoid: wastewater GEMS 3300025861 51
-
AAI clade 8
medoid: human MGYG000002603
-
AAI clade 9
medoid: 3300024953 8
-
AAI clade 10
medoid: 3300017423 5
-
AAI clade 11
medoid: pig GCA 946405745 1
-
AAI clade 12
medoid: 3300006192 20
-
AAI clade 13
medoid: pig LW1 s150947 bin 23
-
AAI clade 14
medoid: dog Snoopy p1 metabat2 high PE 009
-
AAI clade 15
medoid: pig MGYG000302081
-
AAI clade 16
medoid: human MGYG000000545
-
AAI clade 16-1
medoid: human MGYG000000545
-
AAI clade 16-2
medoid: ruminant GCA 015057715 1
-
AAI clade 16-3
medoid: human MGYG000000194
-
AAI clade 16-4
medoid: human MGYG000003326
-
AAI clade 16-5
medoid: human MGYG000000065
-
AAI clade 16-6
medoid: chicken MGYG000309273
-
AAI clade 16-7
medoid: human MGYG000003147
-
AAI clade 16-8
medoid: human MGYG000000076
-
AAI clade 16-9
medoid: human MGYG000000060
-
AAI clade 16-10
medoid: human MGYG000004403
-
AAI clade 16-11
medoid: human MGYG000001862
-
AAI clade 16-12
medoid: pig MGYG000301125
-
AAI clade 16-13
medoid: human MGYG000001564
-
AAI clade 16-14
medoid: human MGYG000000200
-
AAI clade 16-15
medoid: chicken GCA 019120115 1
-
AAI clade 16-16
medoid: human MGYG000001964
-
AAI clade 16-17
medoid: pig Tibetan s3800 12F bin 25
-
AAI clade 16-18
medoid: human MGYG000003552
-
AAI clade 16-19
medoid: human MGYG000003597
7 datasets: human MGYG000000539 (AAI: 95.86%), human MGYG000003009 (AAI: 57.78%), human MGYG000002243 (AAI: 92.71%), human MGYG000002658 (AAI: 92.58%), human MGYG000003442 (AAI: 94.29%), human MGYG000003597 (AAI: 100.0%), and ruminant GCA 015057945 1 (AAI: 68.36%)
-
AAI clade 16-20
medoid: human MGYG000002609
-
AAI clade 16-21
medoid: human MGYG000000018
-
AAI clade 16-22
medoid: human MGYG000001183
-
AAI clade 16-23
medoid: pig MGYG000301798
-
AAI clade 16-1
medoid: human MGYG000000545
-
AAI clade 17
medoid: human MGYG000003895
-
AAI clade 18
medoid: chicken MGYG000313561
-
AAI clade 19
medoid: 3300024912 1
-
AAI clade 20
medoid: human MGYG000002619
-
AAI clade 21
medoid: human MGYG000002428
-
AAI clade 22
medoid: 3300027805 13
-
AAI clade 23
medoid: chicken MGYG000314833
-
AAI clade 24
medoid: wastewater GEMS 3300027794 31
-
AAI clade 25
medoid: human MGYG000004406
-
AAI clade 26
medoid: pig MGYG000301788
-
AAI clade 27
medoid: 3300027834 52
-
AAI clade 28
medoid: 3300020389 13
-
AAI clade 29
medoid: 3300027835 270
-
AAI clade 30
medoid: 3300013004 97
-
AAI clade 31
medoid: 3300025065 6
-
AAI clade 32
medoid: human MGYG000004800
-
AAI clade 33
medoid: ruminant GCA 015060255 1
-
AAI clade 34
medoid: chicken GCA 019115885 1
-
AAI clade 35
medoid: pig SAMEA3663026 metabat2 high PE 017
-
AAI clade 36
medoid: human MGYG000000998
-
AAI clade 37
medoid: 3300012919 27
-
AAI clade 38
medoid: 3300027851 42
-
AAI clade 39
medoid: wastewater ye ASMAG566