AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: human MGYG000000946
  • AAI clade 2 medoid: human MGYG000000019
  • AAI clade 3 medoid: human MGYG000003370
  • AAI clade 4 medoid: 3300027323 37
  • AAI clade 5 medoid: human MGYG000004185
  • AAI clade 6 medoid: human MGYG000001010
  • AAI clade 7 medoid: wastewater GEMS 3300025861 51
  • AAI clade 8 medoid: human MGYG000002603
    • AAI clade 8-1 medoid: human MGYG000002603
    • AAI clade 8-2 medoid: cat SAMEA3387512 maxbin2 low prob 006
    • AAI clade 8-3 medoid: human MGYG000004462
    • AAI clade 8-4 medoid: chicken MGYG000318967
    • AAI clade 8-5 medoid: human MGYG000000534
    • AAI clade 8-6 medoid: human MGYG000000631
    • AAI clade 8-7 medoid: pig MGYG000300141
    • AAI clade 8-8 medoid: human MGYG000003513
    • AAI clade 8-9 medoid: human MGYG000004491
    • AAI clade 8-10 medoid: human MGYG000001975
    • AAI clade 8-11 medoid: ruminant GCA 015060665 1
    • AAI clade 8-12 medoid: human MGYG000002668
    • AAI clade 8-13 medoid: human MGYG000003470
    • AAI clade 8-14 medoid: human MGYG000004848
    • AAI clade 8-15 medoid: pig GCA 946411975 1
    • AAI clade 8-16 medoid: human MGYG000003622
    • AAI clade 8-17 medoid: human MGYG000002637
    • AAI clade 8-18 medoid: pig LW2 s127145 bin 32
    • AAI clade 8-19 medoid: human MGYG000004622
    • AAI clade 8-20 medoid: pig MGYG000301266
    • AAI clade 8-21 medoid: human MGYG000000760
    • AAI clade 8-22 medoid: human MGYG000004629
    • AAI clade 8-23 medoid: human MGYG000003572
    • AAI clade 8-24 medoid: pig MGYG000300255
    • AAI clade 8-25 medoid: pig Duroc SH FCR LF3 bin 2
    • AAI clade 8-26 medoid: pig MGYG000301526
    • AAI clade 8-27 medoid: pig MGYG000301088
  • AAI clade 9 medoid: 3300024953 8
  • AAI clade 10 medoid: 3300017423 5
  • AAI clade 11 medoid: pig GCA 946405745 1
  • AAI clade 12 medoid: 3300006192 20
  • AAI clade 13 medoid: pig LW1 s150947 bin 23
  • AAI clade 14 medoid: dog Snoopy p1 metabat2 high PE 009
  • AAI clade 15 medoid: pig MGYG000302081
  • AAI clade 16 medoid: human MGYG000000545
  • AAI clade 17 medoid: human MGYG000003895
  • AAI clade 18 medoid: chicken MGYG000313561
  • AAI clade 19 medoid: 3300024912 1
  • AAI clade 20 medoid: human MGYG000002619
  • AAI clade 21 medoid: human MGYG000002428
  • AAI clade 22 medoid: 3300027805 13
  • AAI clade 23 medoid: chicken MGYG000314833
  • AAI clade 24 medoid: wastewater GEMS 3300027794 31
  • AAI clade 25 medoid: human MGYG000004406
  • AAI clade 26 medoid: pig MGYG000301788
  • AAI clade 27 medoid: 3300027834 52
  • AAI clade 28 medoid: 3300020389 13
  • AAI clade 29 medoid: 3300027835 270
  • AAI clade 30 medoid: 3300013004 97
  • AAI clade 31 medoid: 3300025065 6
  • AAI clade 32 medoid: human MGYG000004800
  • AAI clade 33 medoid: ruminant GCA 015060255 1
  • AAI clade 34 medoid: chicken GCA 019115885 1
  • AAI clade 35 medoid: pig SAMEA3663026 metabat2 high PE 017
  • AAI clade 36 medoid: human MGYG000000998
  • AAI clade 37 medoid: 3300012919 27
  • AAI clade 38 medoid: 3300027851 42
  • AAI clade 39 medoid: wastewater ye ASMAG566