AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: human MGYG000000946
  • AAI clade 2 medoid: human MGYG000000019
  • AAI clade 3 medoid: human MGYG000003370
  • AAI clade 4 medoid: 3300027323 37
  • AAI clade 5 medoid: human MGYG000004185
  • AAI clade 6 medoid: human MGYG000001010
  • AAI clade 7 medoid: wastewater GEMS 3300025861 51
  • AAI clade 8 medoid: human MGYG000002603
  • AAI clade 9 medoid: 3300024953 8
  • AAI clade 10 medoid: 3300017423 5
  • AAI clade 11 medoid: pig GCA 946405745 1
  • AAI clade 12 medoid: 3300006192 20
  • AAI clade 13 medoid: pig LW1 s150947 bin 23
  • AAI clade 14 medoid: dog Snoopy p1 metabat2 high PE 009
  • AAI clade 15 medoid: pig MGYG000302081
  • AAI clade 16 medoid: human MGYG000000545
  • AAI clade 17 medoid: human MGYG000003895
  • AAI clade 18 medoid: chicken MGYG000313561
  • AAI clade 19 medoid: 3300024912 1
  • AAI clade 20 medoid: human MGYG000002619
  • AAI clade 21 medoid: human MGYG000002428
    • AAI clade 21-1 medoid: dog GCA 008693005 1
    • AAI clade 21-2 medoid: human MGYG000002333
    • AAI clade 21-3 medoid: pig MGYG000301752
    • AAI clade 21-4 medoid: pig GCA 001695235 1
    • AAI clade 21-5 medoid: human MGYG000001348
    • AAI clade 21-6 medoid: pig MGYG000301272
    • AAI clade 21-7 medoid: human MGYG000002374
    • AAI clade 21-8 medoid: chicken GCA 019112865 1
    • AAI clade 21-9 medoid: 3300020171 16
    • AAI clade 21-10 medoid: 3300000227 34
    • AAI clade 21-11 medoid: 3300026484 6
    • AAI clade 21-12 medoid: 3300000232 25
    • AAI clade 21-13 medoid: wastewater GEMS 3300028625 23
    • AAI clade 21-14 medoid: wastewater GEMS 3300014833 13
    • AAI clade 21-15 medoid: 3300027858 55
    • AAI clade 21-16 medoid: 3300026544 16
    • AAI clade 21-17 medoid: 3300000496 3
    • AAI clade 21-18 medoid: 3300028417 26
    • AAI clade 21-19 medoid: 3300006083 6
    • AAI clade 21-20 medoid: 3300028417 24
    • AAI clade 21-21 medoid: 3300027852 46
    • AAI clade 21-22 medoid: 3300025037 1
    • AAI clade 21-23 medoid: 3300028400 56
    • AAI clade 21-24 medoid: 3300027841 15
    • AAI clade 21-25 medoid: bird GCA 005406225 1
    • AAI clade 21-26 medoid: bird X244 Common House Martin metabat2 low PE 004
    • AAI clade 21-27 medoid: dog trim metabat 68
    • AAI clade 21-28 medoid: human MGYG000001357
    • AAI clade 21-29 medoid: human MGYG000002429
  • AAI clade 22 medoid: 3300027805 13
  • AAI clade 23 medoid: chicken MGYG000314833
  • AAI clade 24 medoid: wastewater GEMS 3300027794 31
  • AAI clade 25 medoid: human MGYG000004406
  • AAI clade 26 medoid: pig MGYG000301788
  • AAI clade 27 medoid: 3300027834 52
  • AAI clade 28 medoid: 3300020389 13
  • AAI clade 29 medoid: 3300027835 270
  • AAI clade 30 medoid: 3300013004 97
  • AAI clade 31 medoid: 3300025065 6
  • AAI clade 32 medoid: human MGYG000004800
  • AAI clade 33 medoid: ruminant GCA 015060255 1
  • AAI clade 34 medoid: chicken GCA 019115885 1
  • AAI clade 35 medoid: pig SAMEA3663026 metabat2 high PE 017
  • AAI clade 36 medoid: human MGYG000000998
  • AAI clade 37 medoid: 3300012919 27
  • AAI clade 38 medoid: 3300027851 42
  • AAI clade 39 medoid: wastewater ye ASMAG566