AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: human MGYG000000946
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AAI clade 2
medoid: human MGYG000000019
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AAI clade 3
medoid: human MGYG000003370
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AAI clade 4
medoid: 3300027323 37
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AAI clade 5
medoid: human MGYG000004185
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AAI clade 6
medoid: human MGYG000001010
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AAI clade 7
medoid: wastewater GEMS 3300025861 51
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AAI clade 8
medoid: human MGYG000002603
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AAI clade 9
medoid: 3300024953 8
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AAI clade 10
medoid: 3300017423 5
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AAI clade 11
medoid: pig GCA 946405745 1
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AAI clade 12
medoid: 3300006192 20
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AAI clade 13
medoid: pig LW1 s150947 bin 23
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AAI clade 14
medoid: dog Snoopy p1 metabat2 high PE 009
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AAI clade 15
medoid: pig MGYG000302081
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AAI clade 16
medoid: human MGYG000000545
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AAI clade 17
medoid: human MGYG000003895
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AAI clade 18
medoid: chicken MGYG000313561
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AAI clade 19
medoid: 3300024912 1
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AAI clade 20
medoid: human MGYG000002619
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AAI clade 21
medoid: human MGYG000002428
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AAI clade 21-1
medoid: dog GCA 008693005 1
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AAI clade 21-2
medoid: human MGYG000002333
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AAI clade 21-3
medoid: pig MGYG000301752
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AAI clade 21-4
medoid: pig GCA 001695235 1
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AAI clade 21-5
medoid: human MGYG000001348
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AAI clade 21-6
medoid: pig MGYG000301272
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AAI clade 21-7
medoid: human MGYG000002374
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AAI clade 21-8
medoid: chicken GCA 019112865 1
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AAI clade 21-9
medoid: 3300020171 16
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AAI clade 21-10
medoid: 3300000227 34
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AAI clade 21-11
medoid: 3300026484 6
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AAI clade 21-12
medoid: 3300000232 25
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AAI clade 21-13
medoid: wastewater GEMS 3300028625 23
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AAI clade 21-14
medoid: wastewater GEMS 3300014833 13
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AAI clade 21-15
medoid: 3300027858 55
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AAI clade 21-16
medoid: 3300026544 16
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AAI clade 21-17
medoid: 3300000496 3
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AAI clade 21-18
medoid: 3300028417 26
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AAI clade 21-19
medoid: 3300006083 6
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AAI clade 21-20
medoid: 3300028417 24
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AAI clade 21-21
medoid: 3300027852 46
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AAI clade 21-22
medoid: 3300025037 1
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AAI clade 21-23
medoid: 3300028400 56
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AAI clade 21-24
medoid: 3300027841 15
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AAI clade 21-25
medoid: bird GCA 005406225 1
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AAI clade 21-26
medoid: bird X244 Common House Martin metabat2 low PE 004
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AAI clade 21-27
medoid: dog trim metabat 68
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AAI clade 21-28
medoid: human MGYG000001357
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AAI clade 21-29
medoid: human MGYG000002429
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AAI clade 21-1
medoid: dog GCA 008693005 1
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AAI clade 22
medoid: 3300027805 13
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AAI clade 23
medoid: chicken MGYG000314833
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AAI clade 24
medoid: wastewater GEMS 3300027794 31
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AAI clade 25
medoid: human MGYG000004406
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AAI clade 26
medoid: pig MGYG000301788
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AAI clade 27
medoid: 3300027834 52
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AAI clade 28
medoid: 3300020389 13
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AAI clade 29
medoid: 3300027835 270
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AAI clade 30
medoid: 3300013004 97
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AAI clade 31
medoid: 3300025065 6
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AAI clade 32
medoid: human MGYG000004800
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AAI clade 33
medoid: ruminant GCA 015060255 1
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AAI clade 34
medoid: chicken GCA 019115885 1
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AAI clade 35
medoid: pig SAMEA3663026 metabat2 high PE 017
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AAI clade 36
medoid: human MGYG000000998
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AAI clade 37
medoid: 3300012919 27
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AAI clade 38
medoid: 3300027851 42
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AAI clade 39
medoid: wastewater ye ASMAG566