AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: human MGYG000000946
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AAI clade 2
medoid: human MGYG000000019
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AAI clade 3
medoid: human MGYG000003370
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AAI clade 4
medoid: 3300027323 37
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AAI clade 5
medoid: human MGYG000004185
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AAI clade 6
medoid: human MGYG000001010
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AAI clade 7
medoid: wastewater GEMS 3300025861 51
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AAI clade 8
medoid: human MGYG000002603
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AAI clade 9
medoid: 3300024953 8
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AAI clade 10
medoid: 3300017423 5
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AAI clade 11
medoid: pig GCA 946405745 1
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AAI clade 12
medoid: 3300006192 20
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AAI clade 13
medoid: pig LW1 s150947 bin 23
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AAI clade 14
medoid: dog Snoopy p1 metabat2 high PE 009
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AAI clade 15
medoid: pig MGYG000302081
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AAI clade 16
medoid: human MGYG000000545
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AAI clade 16-1
medoid: human MGYG000000545
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AAI clade 16-2
medoid: ruminant GCA 015057715 1
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AAI clade 16-3
medoid: human MGYG000000194
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AAI clade 16-4
medoid: human MGYG000003326
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AAI clade 16-4-1
medoid: human MGYG000003676
2 datasets: cat SAMEA3387437 metabat2 low PE 008 (AAI: 86.89%) and human MGYG000003676 (AAI: 100.0%)
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AAI clade 16-4-2
medoid: human MGYG000003326
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AAI clade 16-4-3
medoid: human MGYG000000123
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AAI clade 16-4-4
medoid: dog Shorty p1 metabat2 low PE 020
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AAI clade 16-4-5
medoid: chicken DSTMC04003 metabat2 high PE 023
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AAI clade 16-4-6
medoid: chicken MGYG000320616
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AAI clade 16-4-7
medoid: human MGYG000002215
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AAI clade 16-4-8
medoid: human MGYG000002738
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AAI clade 16-4-9
medoid: pig MGYG000301727
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AAI clade 16-4-10
medoid: human MGYG000003695
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AAI clade 16-4-11
medoid: chicken MGYG000311831
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AAI clade 16-4-12
medoid: chicken GCA 018711815 1
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AAI clade 16-4-13
medoid: chicken MGYG000318392
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AAI clade 16-4-14
medoid: chicken GCA 018714325 1
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AAI clade 16-4-15
medoid: chicken HHCFC02800 maxbin2 low prob 001
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AAI clade 16-4-16
medoid: human MGYG000002475
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AAI clade 16-4-17
medoid: pig MGYG000299989
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AAI clade 16-4-18
medoid: pig MGYG000301559
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AAI clade 16-4-19
medoid: pig MGYG000301478
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AAI clade 16-4-20
medoid: pig W5042 bin 21
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AAI clade 16-4-21
medoid: ruminant GCA 015057375 1
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AAI clade 16-4-1
medoid: human MGYG000003676
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AAI clade 16-5
medoid: human MGYG000000065
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AAI clade 16-6
medoid: chicken MGYG000309273
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AAI clade 16-7
medoid: human MGYG000003147
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AAI clade 16-8
medoid: human MGYG000000076
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AAI clade 16-9
medoid: human MGYG000000060
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AAI clade 16-10
medoid: human MGYG000004403
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AAI clade 16-11
medoid: human MGYG000001862
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AAI clade 16-12
medoid: pig MGYG000301125
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AAI clade 16-13
medoid: human MGYG000001564
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AAI clade 16-14
medoid: human MGYG000000200
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AAI clade 16-15
medoid: chicken GCA 019120115 1
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AAI clade 16-16
medoid: human MGYG000001964
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AAI clade 16-17
medoid: pig Tibetan s3800 12F bin 25
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AAI clade 16-18
medoid: human MGYG000003552
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AAI clade 16-19
medoid: human MGYG000003597
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AAI clade 16-20
medoid: human MGYG000002609
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AAI clade 16-21
medoid: human MGYG000000018
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AAI clade 16-22
medoid: human MGYG000001183
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AAI clade 16-23
medoid: pig MGYG000301798
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AAI clade 16-1
medoid: human MGYG000000545
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AAI clade 17
medoid: human MGYG000003895
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AAI clade 18
medoid: chicken MGYG000313561
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AAI clade 19
medoid: 3300024912 1
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AAI clade 20
medoid: human MGYG000002619
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AAI clade 21
medoid: human MGYG000002428
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AAI clade 22
medoid: 3300027805 13
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AAI clade 23
medoid: chicken MGYG000314833
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AAI clade 24
medoid: wastewater GEMS 3300027794 31
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AAI clade 25
medoid: human MGYG000004406
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AAI clade 26
medoid: pig MGYG000301788
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AAI clade 27
medoid: 3300027834 52
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AAI clade 28
medoid: 3300020389 13
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AAI clade 29
medoid: 3300027835 270
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AAI clade 30
medoid: 3300013004 97
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AAI clade 31
medoid: 3300025065 6
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AAI clade 32
medoid: human MGYG000004800
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AAI clade 33
medoid: ruminant GCA 015060255 1
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AAI clade 34
medoid: chicken GCA 019115885 1
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AAI clade 35
medoid: pig SAMEA3663026 metabat2 high PE 017
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AAI clade 36
medoid: human MGYG000000998
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AAI clade 37
medoid: 3300012919 27
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AAI clade 38
medoid: 3300027851 42
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AAI clade 39
medoid: wastewater ye ASMAG566