AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: human MGYG000000946
  • AAI clade 2 medoid: human MGYG000000019
  • AAI clade 3 medoid: human MGYG000003370
  • AAI clade 4 medoid: 3300027323 37
  • AAI clade 5 medoid: human MGYG000004185
  • AAI clade 6 medoid: human MGYG000001010
  • AAI clade 7 medoid: wastewater GEMS 3300025861 51
  • AAI clade 8 medoid: human MGYG000002603
  • AAI clade 9 medoid: 3300024953 8
  • AAI clade 10 medoid: 3300017423 5
  • AAI clade 11 medoid: pig GCA 946405745 1
  • AAI clade 12 medoid: 3300006192 20
  • AAI clade 13 medoid: pig LW1 s150947 bin 23
  • AAI clade 14 medoid: dog Snoopy p1 metabat2 high PE 009
  • AAI clade 15 medoid: pig MGYG000302081
  • AAI clade 16 medoid: human MGYG000000545
    • AAI clade 16-1 medoid: human MGYG000000545
    • AAI clade 16-2 medoid: ruminant GCA 015057715 1
    • AAI clade 16-3 medoid: human MGYG000000194
    • AAI clade 16-4 medoid: human MGYG000003326
    • AAI clade 16-5 medoid: human MGYG000000065
    • AAI clade 16-6 medoid: chicken MGYG000309273
    • AAI clade 16-7 medoid: human MGYG000003147
    • AAI clade 16-8 medoid: human MGYG000000076
    • AAI clade 16-9 medoid: human MGYG000000060
    • AAI clade 16-10 medoid: human MGYG000004403
    • AAI clade 16-11 medoid: human MGYG000001862
    • AAI clade 16-12 medoid: pig MGYG000301125
    • AAI clade 16-13 medoid: human MGYG000001564
    • AAI clade 16-14 medoid: human MGYG000000200
    • AAI clade 16-15 medoid: chicken GCA 019120115 1
    • AAI clade 16-16 medoid: human MGYG000001964
    • AAI clade 16-17 medoid: pig Tibetan s3800 12F bin 25
      • AAI clade 16-17-1 medoid: human MGYG000000325
      • AAI clade 16-17-2 medoid: human MGYG000003422
      • AAI clade 16-17-3 medoid: pig Tibetan s3800 12F bin 25
      • AAI clade 16-17-4 medoid: human MGYG000003613
      • AAI clade 16-17-5 medoid: human MGYG000001814
      • AAI clade 16-17-6 medoid: human MGYG000004593
      • AAI clade 16-17-7 medoid: septage norm metabat 21
      • AAI clade 16-17-8 medoid: human MGYG000000346
      • AAI clade 16-17-9 medoid: human MGYG000000361
      • AAI clade 16-17-10 medoid: pig MGYG000301931
      • AAI clade 16-17-11 medoid: human MGYG000000886
      • AAI clade 16-17-12 medoid: pig MGYG000302142
      • AAI clade 16-17-13 medoid: pig Duroc SH FCR HF1 bin 10
      • AAI clade 16-17-14 medoid: human MGYG000003517
      • AAI clade 16-17-15 medoid: ruminant GCA 015057055 1
      • AAI clade 16-17-16 medoid: human MGYG000004039
      • AAI clade 16-17-17 medoid: pig Boar s5 bin 22
      • AAI clade 16-17-18 medoid: pig F4924 bin 53
      • AAI clade 16-17-19 medoid: pig GCA 946409055 1
      • AAI clade 16-17-20 medoid: pig F5111 bin 38
      • AAI clade 16-17-21 medoid: pig F5385 bin 3
      • AAI clade 16-17-22 medoid: pig GCA 016292845 1
      • AAI clade 16-17-23 medoid: pig GCA 016293925 1
      • AAI clade 16-17-24 medoid: pig GCA 016294075 1
      • AAI clade 16-17-25 medoid: pig MGYG000299719
      • AAI clade 16-17-26 medoid: pig MGYG000302470
      • AAI clade 16-17-27 medoid: pig SAMEA3663209 metabat2 high PE 008
      • AAI clade 16-17-28 medoid: pig S41004B bin 2
      • AAI clade 16-17-29 medoid: ruminant GCA 015056655 1
      • AAI clade 16-17-30 medoid: ruminant GCA 015056625 1
      • AAI clade 16-17-31 medoid: ruminant GCA 015056735 1
        1 dataset: ruminant GCA 015056735 1 (AAI: 100.0%)
      • AAI clade 16-17-32 medoid: ruminant GCA 015056765 1
      • AAI clade 16-17-33 medoid: ruminant GCA 015056775 1
      • AAI clade 16-17-34 medoid: ruminant GCA 015056805 1
      • AAI clade 16-17-35 medoid: ruminant GCA 015057025 1
      • AAI clade 16-17-36 medoid: ruminant GCA 015057365 1
      • AAI clade 16-17-37 medoid: ruminant GCA 015057905 1
      • AAI clade 16-17-38 medoid: ruminant X409 Impala metabat2 low PE 015
    • AAI clade 16-18 medoid: human MGYG000003552
    • AAI clade 16-19 medoid: human MGYG000003597
    • AAI clade 16-20 medoid: human MGYG000002609
    • AAI clade 16-21 medoid: human MGYG000000018
    • AAI clade 16-22 medoid: human MGYG000001183
    • AAI clade 16-23 medoid: pig MGYG000301798
  • AAI clade 17 medoid: human MGYG000003895
  • AAI clade 18 medoid: chicken MGYG000313561
  • AAI clade 19 medoid: 3300024912 1
  • AAI clade 20 medoid: human MGYG000002619
  • AAI clade 21 medoid: human MGYG000002428
  • AAI clade 22 medoid: 3300027805 13
  • AAI clade 23 medoid: chicken MGYG000314833
  • AAI clade 24 medoid: wastewater GEMS 3300027794 31
  • AAI clade 25 medoid: human MGYG000004406
  • AAI clade 26 medoid: pig MGYG000301788
  • AAI clade 27 medoid: 3300027834 52
  • AAI clade 28 medoid: 3300020389 13
  • AAI clade 29 medoid: 3300027835 270
  • AAI clade 30 medoid: 3300013004 97
  • AAI clade 31 medoid: 3300025065 6
  • AAI clade 32 medoid: human MGYG000004800
  • AAI clade 33 medoid: ruminant GCA 015060255 1
  • AAI clade 34 medoid: chicken GCA 019115885 1
  • AAI clade 35 medoid: pig SAMEA3663026 metabat2 high PE 017
  • AAI clade 36 medoid: human MGYG000000998
  • AAI clade 37 medoid: 3300012919 27
  • AAI clade 38 medoid: 3300027851 42
  • AAI clade 39 medoid: wastewater ye ASMAG566