AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: human MGYG000000946
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AAI clade 2
medoid: human MGYG000000019
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AAI clade 3
medoid: human MGYG000003370
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AAI clade 4
medoid: 3300027323 37
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AAI clade 5
medoid: human MGYG000004185
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AAI clade 6
medoid: human MGYG000001010
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AAI clade 7
medoid: wastewater GEMS 3300025861 51
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AAI clade 8
medoid: human MGYG000002603
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AAI clade 9
medoid: 3300024953 8
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AAI clade 10
medoid: 3300017423 5
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AAI clade 11
medoid: pig GCA 946405745 1
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AAI clade 12
medoid: 3300006192 20
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AAI clade 13
medoid: pig LW1 s150947 bin 23
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AAI clade 14
medoid: dog Snoopy p1 metabat2 high PE 009
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AAI clade 15
medoid: pig MGYG000302081
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AAI clade 16
medoid: human MGYG000000545
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AAI clade 16-1
medoid: human MGYG000000545
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AAI clade 16-1-1
medoid: human MGYG000000545
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AAI clade 16-1-1-1
medoid: human MGYG000000545
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AAI clade 16-1-1-1-1
medoid: human MGYG000000545
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AAI clade 16-1-1-1-1-1
medoid: human MGYG000000545
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AAI clade 16-1-1-1-1-1-1
medoid: dog Snoopy p1 metabat2 high PE 024
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AAI clade 16-1-1-1-1-1-2
medoid: human MGYG000000545
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AAI clade 16-1-1-1-1-1-2-1
medoid: human MGYG000000545
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AAI clade 16-1-1-1-1-1-2-1-1
medoid: human MGYG000000545
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AAI clade 16-1-1-1-1-1-2-1-1-1
medoid: human MGYG000000545
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AAI clade 16-1-1-1-1-1-2-1-1-2
medoid: human MGYG000002251
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AAI clade 16-1-1-1-1-1-2-1-1-3
medoid: 3300014656 19
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AAI clade 16-1-1-1-1-1-2-1-1-4
medoid: 3300017988 17
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AAI clade 16-1-1-1-1-1-2-1-1-5
medoid: 3300028174 7
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AAI clade 16-1-1-1-1-1-2-1-1-6
medoid: ruminant GCA 015069185 1
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AAI clade 16-1-1-1-1-1-2-1-1-1
medoid: human MGYG000000545
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AAI clade 16-1-1-1-1-1-2-1-2
medoid: 3300002231 45
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AAI clade 16-1-1-1-1-1-2-1-3
medoid: wastewater GEMS 3300025471 9
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AAI clade 16-1-1-1-1-1-2-1-1
medoid: human MGYG000000545
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AAI clade 16-1-1-1-1-1-2-2
medoid: dog Scrappy p2 metabat2 low PE 009
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AAI clade 16-1-1-1-1-1-2-3
medoid: 3300010354 36
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AAI clade 16-1-1-1-1-1-2-4
medoid: 3300017522 43
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AAI clade 16-1-1-1-1-1-2-5
medoid: 3300027893 135
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AAI clade 16-1-1-1-1-1-2-6
medoid: pig F5421 bin 31
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AAI clade 16-1-1-1-1-1-2-7
medoid: wastewater ye ASMAG995
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AAI clade 16-1-1-1-1-1-2-1
medoid: human MGYG000000545
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AAI clade 16-1-1-1-1-1-3
medoid: 3300013125 152
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AAI clade 16-1-1-1-1-1-4
medoid: wastewater ye ASMAG344
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AAI clade 16-1-1-1-1-1-5
medoid: ruminant GCA 015069215 1
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AAI clade 16-1-1-1-1-1-1
medoid: dog Snoopy p1 metabat2 high PE 024
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AAI clade 16-1-1-1-1-2
medoid: pig MGYG000300091
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AAI clade 16-1-1-1-1-3
medoid: chicken GCA 018710905 1
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AAI clade 16-1-1-1-1-4
medoid: 3300000230 38
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AAI clade 16-1-1-1-1-5
medoid: 3300026488 9
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AAI clade 16-1-1-1-1-6
medoid: wastewater GEMS 3300025858 77
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AAI clade 16-1-1-1-1-7
medoid: 3300027841 16
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AAI clade 16-1-1-1-1-8
medoid: wastewater GEMS 3300000558 30
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AAI clade 16-1-1-1-1-9
medoid: human MGYG000001543
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AAI clade 16-1-1-1-1-10
medoid: human MGYG000000175
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AAI clade 16-1-1-1-1-1
medoid: human MGYG000000545
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AAI clade 16-1-1-1-2
medoid: chicken MGYG000313060
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AAI clade 16-1-1-1-3
medoid: pig QHF6 unmapped bin 97
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AAI clade 16-1-1-1-1
medoid: human MGYG000000545
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AAI clade 16-1-1-2
medoid: chicken MGYG000313757
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AAI clade 16-1-1-3
medoid: human MGYG000002126
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AAI clade 16-1-1-4
medoid: human MGYG000000204
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AAI clade 16-1-1-5
medoid: 3300013131 144
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AAI clade 16-1-1-6
medoid: human MGYG000001505
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AAI clade 16-1-1-1
medoid: human MGYG000000545
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AAI clade 16-1-2
medoid: chicken MGYG000317423
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AAI clade 16-1-3
medoid: human MGYG000000398
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AAI clade 16-1-1
medoid: human MGYG000000545
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AAI clade 16-2
medoid: ruminant GCA 015057715 1
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AAI clade 16-3
medoid: human MGYG000000194
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AAI clade 16-4
medoid: human MGYG000003326
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AAI clade 16-5
medoid: human MGYG000000065
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AAI clade 16-6
medoid: chicken MGYG000309273
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AAI clade 16-7
medoid: human MGYG000003147
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AAI clade 16-8
medoid: human MGYG000000076
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AAI clade 16-9
medoid: human MGYG000000060
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AAI clade 16-10
medoid: human MGYG000004403
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AAI clade 16-11
medoid: human MGYG000001862
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AAI clade 16-12
medoid: pig MGYG000301125
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AAI clade 16-13
medoid: human MGYG000001564
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AAI clade 16-14
medoid: human MGYG000000200
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AAI clade 16-15
medoid: chicken GCA 019120115 1
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AAI clade 16-16
medoid: human MGYG000001964
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AAI clade 16-17
medoid: pig Tibetan s3800 12F bin 25
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AAI clade 16-18
medoid: human MGYG000003552
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AAI clade 16-19
medoid: human MGYG000003597
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AAI clade 16-20
medoid: human MGYG000002609
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AAI clade 16-21
medoid: human MGYG000000018
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AAI clade 16-22
medoid: human MGYG000001183
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AAI clade 16-23
medoid: pig MGYG000301798
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AAI clade 16-1
medoid: human MGYG000000545
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AAI clade 17
medoid: human MGYG000003895
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AAI clade 18
medoid: chicken MGYG000313561
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AAI clade 19
medoid: 3300024912 1
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AAI clade 20
medoid: human MGYG000002619
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AAI clade 21
medoid: human MGYG000002428
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AAI clade 22
medoid: 3300027805 13
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AAI clade 23
medoid: chicken MGYG000314833
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AAI clade 24
medoid: wastewater GEMS 3300027794 31
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AAI clade 25
medoid: human MGYG000004406
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AAI clade 26
medoid: pig MGYG000301788
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AAI clade 27
medoid: 3300027834 52
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AAI clade 28
medoid: 3300020389 13
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AAI clade 29
medoid: 3300027835 270
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AAI clade 30
medoid: 3300013004 97
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AAI clade 31
medoid: 3300025065 6
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AAI clade 32
medoid: human MGYG000004800
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AAI clade 33
medoid: ruminant GCA 015060255 1
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AAI clade 34
medoid: chicken GCA 019115885 1
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AAI clade 35
medoid: pig SAMEA3663026 metabat2 high PE 017
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AAI clade 36
medoid: human MGYG000000998
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AAI clade 37
medoid: 3300012919 27
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AAI clade 38
medoid: 3300027851 42
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AAI clade 39
medoid: wastewater ye ASMAG566