AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
-
AAI clade 1
medoid: human MGYG000000946
-
AAI clade 2
medoid: human MGYG000000019
-
AAI clade 3
medoid: human MGYG000003370
-
AAI clade 4
medoid: 3300027323 37
-
AAI clade 5
medoid: human MGYG000004185
-
AAI clade 6
medoid: human MGYG000001010
-
AAI clade 7
medoid: wastewater GEMS 3300025861 51
-
AAI clade 8
medoid: human MGYG000002603
-
AAI clade 9
medoid: 3300024953 8
-
AAI clade 9-1
medoid: human MGYG000003836
-
AAI clade 9-2
medoid: human MGYG000000632
-
AAI clade 9-3
medoid: 3300027878 112
-
AAI clade 9-4
medoid: human MGYG000002703
-
AAI clade 9-5
medoid: 3300025437 3
-
AAI clade 9-6
medoid: 3300024955 6
-
AAI clade 9-7
medoid: 3300024953 8
-
AAI clade 9-8
medoid: wastewater singleton GCA 016716965 1 ASM1671696v1 genomic
-
AAI clade 9-8-1
medoid: 3300013131 80
-
AAI clade 9-8-2
medoid: 3300013136 36
-
AAI clade 9-8-3
medoid: 3300027841 10
-
AAI clade 9-8-4
medoid: 3300015360 75
-
AAI clade 9-8-5
medoid: 3300017473 19
-
AAI clade 9-8-6
medoid: wastewater ye ASMAG491
-
AAI clade 9-8-7
medoid: 3300017950 36
-
AAI clade 9-8-8
medoid: 3300023184 45
-
AAI clade 9-8-9
medoid: 3300027917 59
-
AAI clade 9-8-10
medoid: 3300024944 3
-
AAI clade 9-8-11
medoid: wastewater ye ASMAG959
-
AAI clade 9-8-12
medoid: wastewater ye ASMAG156
-
AAI clade 9-8-13
medoid: 3300027760 39
-
AAI clade 9-8-14
medoid: 3300027788 29
-
AAI clade 9-8-15
medoid: wastewater singleton GCA 016713305 1 ASM1671330v1 genomic
-
AAI clade 9-8-16
medoid: 3300027878 92
-
AAI clade 9-8-17
medoid: 3300027850 21
-
AAI clade 9-8-18
medoid: 3300027851 25
-
AAI clade 9-8-19
medoid: wastewater singleton GCA 016707985 1 ASM1670798v1 genomic
5 datasets: 3300027878 84 (AAI: 60.42%), wastewater GEMS 2030936003 2 (AAI: 69.66%), wastewater singleton GCA 016703785 1 ASM1670378v1 genomic (AAI: 72.06%), wastewater singleton GCA 016707985 1 ASM1670798v1 genomic (AAI: 100.0%), and wastewater ye ASMAG683 (AAI: 64.7%)
-
AAI clade 9-8-20
medoid: wastewater GEMS 3300025678 4
-
AAI clade 9-8-21
medoid: wastewater ye ASMAG129
-
AAI clade 9-8-22
medoid: wastewater singleton GCA 016703645 1 ASM1670364v1 genomic
-
AAI clade 9-8-23
medoid: wastewater singleton GCA 016705825 1 ASM1670582v1 genomic
-
AAI clade 9-8-24
medoid: wastewater singleton GCA 016709665 1 ASM1670966v1 genomic
-
AAI clade 9-8-25
medoid: wastewater singleton GCA 016710525 1 ASM1671052v1 genomic
-
AAI clade 9-8-26
medoid: wastewater singleton GCA 016711925 1 ASM1671192v1 genomic
-
AAI clade 9-8-27
medoid: wastewater ye ASMAG680
-
AAI clade 9-8-28
medoid: wastewater singleton GCA 016713125 1 ASM1671312v1 genomic
-
AAI clade 9-8-29
medoid: wastewater singleton GCA 016717855 1 ASM1671785v1 genomic
-
AAI clade 9-8-30
medoid: wastewater ye ASMAG771
-
AAI clade 9-8-31
medoid: wastewater ye ASMAG755
-
AAI clade 9-8-32
medoid: wastewater ye ASMAG848
-
AAI clade 9-8-33
medoid: wastewater ye ASMAG867
-
AAI clade 9-8-1
medoid: 3300013131 80
-
AAI clade 9-1
medoid: human MGYG000003836
-
AAI clade 10
medoid: 3300017423 5
-
AAI clade 11
medoid: pig GCA 946405745 1
-
AAI clade 12
medoid: 3300006192 20
-
AAI clade 13
medoid: pig LW1 s150947 bin 23
-
AAI clade 14
medoid: dog Snoopy p1 metabat2 high PE 009
-
AAI clade 15
medoid: pig MGYG000302081
-
AAI clade 16
medoid: human MGYG000000545
-
AAI clade 17
medoid: human MGYG000003895
-
AAI clade 18
medoid: chicken MGYG000313561
-
AAI clade 19
medoid: 3300024912 1
-
AAI clade 20
medoid: human MGYG000002619
-
AAI clade 21
medoid: human MGYG000002428
-
AAI clade 22
medoid: 3300027805 13
-
AAI clade 23
medoid: chicken MGYG000314833
-
AAI clade 24
medoid: wastewater GEMS 3300027794 31
-
AAI clade 25
medoid: human MGYG000004406
-
AAI clade 26
medoid: pig MGYG000301788
-
AAI clade 27
medoid: 3300027834 52
-
AAI clade 28
medoid: 3300020389 13
-
AAI clade 29
medoid: 3300027835 270
-
AAI clade 30
medoid: 3300013004 97
-
AAI clade 31
medoid: 3300025065 6
-
AAI clade 32
medoid: human MGYG000004800
-
AAI clade 33
medoid: ruminant GCA 015060255 1
-
AAI clade 34
medoid: chicken GCA 019115885 1
-
AAI clade 35
medoid: pig SAMEA3663026 metabat2 high PE 017
-
AAI clade 36
medoid: human MGYG000000998
-
AAI clade 37
medoid: 3300012919 27
-
AAI clade 38
medoid: 3300027851 42
-
AAI clade 39
medoid: wastewater ye ASMAG566