AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: human MGYG000000946
  • AAI clade 2 medoid: human MGYG000000019
  • AAI clade 3 medoid: human MGYG000003370
  • AAI clade 4 medoid: 3300027323 37
  • AAI clade 5 medoid: human MGYG000004185
  • AAI clade 6 medoid: human MGYG000001010
  • AAI clade 7 medoid: wastewater GEMS 3300025861 51
  • AAI clade 8 medoid: human MGYG000002603
  • AAI clade 9 medoid: 3300024953 8
    • AAI clade 9-1 medoid: human MGYG000003836
    • AAI clade 9-2 medoid: human MGYG000000632
    • AAI clade 9-3 medoid: 3300027878 112
    • AAI clade 9-4 medoid: human MGYG000002703
    • AAI clade 9-5 medoid: 3300025437 3
    • AAI clade 9-6 medoid: 3300024955 6
    • AAI clade 9-7 medoid: 3300024953 8
    • AAI clade 9-8 medoid: wastewater singleton GCA 016716965 1 ASM1671696v1 genomic
      • AAI clade 9-8-1 medoid: 3300013131 80
      • AAI clade 9-8-2 medoid: 3300013136 36
      • AAI clade 9-8-3 medoid: 3300027841 10
      • AAI clade 9-8-4 medoid: 3300015360 75
      • AAI clade 9-8-5 medoid: 3300017473 19
      • AAI clade 9-8-6 medoid: wastewater ye ASMAG491
      • AAI clade 9-8-7 medoid: 3300017950 36
      • AAI clade 9-8-8 medoid: 3300023184 45
      • AAI clade 9-8-9 medoid: 3300027917 59
      • AAI clade 9-8-10 medoid: 3300024944 3
      • AAI clade 9-8-11 medoid: wastewater ye ASMAG959
      • AAI clade 9-8-12 medoid: wastewater ye ASMAG156
      • AAI clade 9-8-13 medoid: 3300027760 39
      • AAI clade 9-8-14 medoid: 3300027788 29
      • AAI clade 9-8-15 medoid: wastewater singleton GCA 016713305 1 ASM1671330v1 genomic
      • AAI clade 9-8-16 medoid: 3300027878 92
      • AAI clade 9-8-17 medoid: 3300027850 21
        1 dataset: 3300027850 21 (AAI: 100.0%)
      • AAI clade 9-8-18 medoid: 3300027851 25
      • AAI clade 9-8-19 medoid: wastewater singleton GCA 016707985 1 ASM1670798v1 genomic
      • AAI clade 9-8-20 medoid: wastewater GEMS 3300025678 4
      • AAI clade 9-8-21 medoid: wastewater ye ASMAG129
      • AAI clade 9-8-22 medoid: wastewater singleton GCA 016703645 1 ASM1670364v1 genomic
      • AAI clade 9-8-23 medoid: wastewater singleton GCA 016705825 1 ASM1670582v1 genomic
      • AAI clade 9-8-24 medoid: wastewater singleton GCA 016709665 1 ASM1670966v1 genomic
      • AAI clade 9-8-25 medoid: wastewater singleton GCA 016710525 1 ASM1671052v1 genomic
      • AAI clade 9-8-26 medoid: wastewater singleton GCA 016711925 1 ASM1671192v1 genomic
      • AAI clade 9-8-27 medoid: wastewater ye ASMAG680
      • AAI clade 9-8-28 medoid: wastewater singleton GCA 016713125 1 ASM1671312v1 genomic
      • AAI clade 9-8-29 medoid: wastewater singleton GCA 016717855 1 ASM1671785v1 genomic
      • AAI clade 9-8-30 medoid: wastewater ye ASMAG771
      • AAI clade 9-8-31 medoid: wastewater ye ASMAG755
      • AAI clade 9-8-32 medoid: wastewater ye ASMAG848
      • AAI clade 9-8-33 medoid: wastewater ye ASMAG867
  • AAI clade 10 medoid: 3300017423 5
  • AAI clade 11 medoid: pig GCA 946405745 1
  • AAI clade 12 medoid: 3300006192 20
  • AAI clade 13 medoid: pig LW1 s150947 bin 23
  • AAI clade 14 medoid: dog Snoopy p1 metabat2 high PE 009
  • AAI clade 15 medoid: pig MGYG000302081
  • AAI clade 16 medoid: human MGYG000000545
  • AAI clade 17 medoid: human MGYG000003895
  • AAI clade 18 medoid: chicken MGYG000313561
  • AAI clade 19 medoid: 3300024912 1
  • AAI clade 20 medoid: human MGYG000002619
  • AAI clade 21 medoid: human MGYG000002428
  • AAI clade 22 medoid: 3300027805 13
  • AAI clade 23 medoid: chicken MGYG000314833
  • AAI clade 24 medoid: wastewater GEMS 3300027794 31
  • AAI clade 25 medoid: human MGYG000004406
  • AAI clade 26 medoid: pig MGYG000301788
  • AAI clade 27 medoid: 3300027834 52
  • AAI clade 28 medoid: 3300020389 13
  • AAI clade 29 medoid: 3300027835 270
  • AAI clade 30 medoid: 3300013004 97
  • AAI clade 31 medoid: 3300025065 6
  • AAI clade 32 medoid: human MGYG000004800
  • AAI clade 33 medoid: ruminant GCA 015060255 1
  • AAI clade 34 medoid: chicken GCA 019115885 1
  • AAI clade 35 medoid: pig SAMEA3663026 metabat2 high PE 017
  • AAI clade 36 medoid: human MGYG000000998
  • AAI clade 37 medoid: 3300012919 27
  • AAI clade 38 medoid: 3300027851 42
  • AAI clade 39 medoid: wastewater ye ASMAG566