AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: human MGYG000000946
  • AAI clade 2 medoid: human MGYG000000019
  • AAI clade 3 medoid: human MGYG000003370
  • AAI clade 4 medoid: 3300027323 37
  • AAI clade 5 medoid: human MGYG000004185
  • AAI clade 6 medoid: human MGYG000001010
  • AAI clade 7 medoid: wastewater GEMS 3300025861 51
  • AAI clade 8 medoid: human MGYG000002603
  • AAI clade 9 medoid: 3300024953 8
    • AAI clade 9-1 medoid: human MGYG000003836
    • AAI clade 9-2 medoid: human MGYG000000632
    • AAI clade 9-3 medoid: 3300027878 112
      • AAI clade 9-3-1 medoid: 3300017434 28
      • AAI clade 9-3-2 medoid: 3300025436 4
      • AAI clade 9-3-3 medoid: 3300013131 35
      • AAI clade 9-3-4 medoid: 3300010370 16
      • AAI clade 9-3-5 medoid: 3300027878 112
      • AAI clade 9-3-6 medoid: 3300027649 26
      • AAI clade 9-3-7 medoid: wastewater singleton GCA 016708955 1 ASM1670895v1 genomic
      • AAI clade 9-3-8 medoid: 3300013131 78
      • AAI clade 9-3-9 medoid: 3300014208 47
      • AAI clade 9-3-10 medoid: 3300014060 42
      • AAI clade 9-3-11 medoid: 3300014060 46
      • AAI clade 9-3-12 medoid: 3300017532 74
      • AAI clade 9-3-13 medoid: 3300024060 37
      • AAI clade 9-3-14 medoid: 3300024344 32
      • AAI clade 9-3-15 medoid: 3300025897 50
      • AAI clade 9-3-16 medoid: 3300027649 30
      • AAI clade 9-3-17 medoid: 3300027733 31
      • AAI clade 9-3-18 medoid: 3300027749 23
      • AAI clade 9-3-19 medoid: 3300027770 28
      • AAI clade 9-3-20 medoid: 3300027799 6
      • AAI clade 9-3-21 medoid: 3300027815 25
      • AAI clade 9-3-22 medoid: 3300027815 33
      • AAI clade 9-3-23 medoid: 3300027815 68
      • AAI clade 9-3-24 medoid: 3300027832 34
      • AAI clade 9-3-25 medoid: 3300027845 19
      • AAI clade 9-3-26 medoid: 3300027878 63
      • AAI clade 9-3-27 medoid: wastewater GEMS 3300012956 82
      • AAI clade 9-3-28 medoid: wastewater GEMS 3300009540 46
      • AAI clade 9-3-29 medoid: wastewater GEMS 3300026516 57
      • AAI clade 9-3-30 medoid: wastewater singleton GCA 016717525 1 ASM1671752v1 genomic
      • AAI clade 9-3-31 medoid: wastewater singleton GCA 016699915 1 ASM1669991v1 genomic
      • AAI clade 9-3-32 medoid: wastewater singleton GCA 016703745 1 ASM1670374v1 genomic
      • AAI clade 9-3-33 medoid: wastewater ye ASMAG563
      • AAI clade 9-3-34 medoid: wastewater singleton GCA 016716325 1 ASM1671632v1 genomic
      • AAI clade 9-3-35 medoid: wastewater ye ASMAG1253
      • AAI clade 9-3-36 medoid: wastewater ye ASMAG1328
      • AAI clade 9-3-37 medoid: wastewater ye ASMAG1666
      • AAI clade 9-3-38 medoid: wastewater ye ASMAG1753
      • AAI clade 9-3-39 medoid: wastewater ye ASMAG1913
      • AAI clade 9-3-40 medoid: wastewater ye ASMAG1996
      • AAI clade 9-3-41 medoid: wastewater ye ASMAG836
        1 dataset: wastewater ye ASMAG836 (AAI: 100.0%)
      • AAI clade 9-3-42 medoid: WRFA trim metabat 3
    • AAI clade 9-4 medoid: human MGYG000002703
    • AAI clade 9-5 medoid: 3300025437 3
    • AAI clade 9-6 medoid: 3300024955 6
    • AAI clade 9-7 medoid: 3300024953 8
    • AAI clade 9-8 medoid: wastewater singleton GCA 016716965 1 ASM1671696v1 genomic
  • AAI clade 10 medoid: 3300017423 5
  • AAI clade 11 medoid: pig GCA 946405745 1
  • AAI clade 12 medoid: 3300006192 20
  • AAI clade 13 medoid: pig LW1 s150947 bin 23
  • AAI clade 14 medoid: dog Snoopy p1 metabat2 high PE 009
  • AAI clade 15 medoid: pig MGYG000302081
  • AAI clade 16 medoid: human MGYG000000545
  • AAI clade 17 medoid: human MGYG000003895
  • AAI clade 18 medoid: chicken MGYG000313561
  • AAI clade 19 medoid: 3300024912 1
  • AAI clade 20 medoid: human MGYG000002619
  • AAI clade 21 medoid: human MGYG000002428
  • AAI clade 22 medoid: 3300027805 13
  • AAI clade 23 medoid: chicken MGYG000314833
  • AAI clade 24 medoid: wastewater GEMS 3300027794 31
  • AAI clade 25 medoid: human MGYG000004406
  • AAI clade 26 medoid: pig MGYG000301788
  • AAI clade 27 medoid: 3300027834 52
  • AAI clade 28 medoid: 3300020389 13
  • AAI clade 29 medoid: 3300027835 270
  • AAI clade 30 medoid: 3300013004 97
  • AAI clade 31 medoid: 3300025065 6
  • AAI clade 32 medoid: human MGYG000004800
  • AAI clade 33 medoid: ruminant GCA 015060255 1
  • AAI clade 34 medoid: chicken GCA 019115885 1
  • AAI clade 35 medoid: pig SAMEA3663026 metabat2 high PE 017
  • AAI clade 36 medoid: human MGYG000000998
  • AAI clade 37 medoid: 3300012919 27
  • AAI clade 38 medoid: 3300027851 42
  • AAI clade 39 medoid: wastewater ye ASMAG566