AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: human MGYG000000946
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AAI clade 2
medoid: human MGYG000000019
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AAI clade 3
medoid: human MGYG000003370
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AAI clade 4
medoid: 3300027323 37
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AAI clade 5
medoid: human MGYG000004185
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AAI clade 6
medoid: human MGYG000001010
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AAI clade 7
medoid: wastewater GEMS 3300025861 51
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AAI clade 8
medoid: human MGYG000002603
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AAI clade 9
medoid: 3300024953 8
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AAI clade 9-1
medoid: human MGYG000003836
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AAI clade 9-2
medoid: human MGYG000000632
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AAI clade 9-3
medoid: 3300027878 112
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AAI clade 9-3-1
medoid: 3300017434 28
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AAI clade 9-3-2
medoid: 3300025436 4
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AAI clade 9-3-3
medoid: 3300013131 35
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AAI clade 9-3-4
medoid: 3300010370 16
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AAI clade 9-3-5
medoid: 3300027878 112
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AAI clade 9-3-6
medoid: 3300027649 26
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AAI clade 9-3-7
medoid: wastewater singleton GCA 016708955 1 ASM1670895v1 genomic
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AAI clade 9-3-8
medoid: 3300013131 78
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AAI clade 9-3-9
medoid: 3300014208 47
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AAI clade 9-3-10
medoid: 3300014060 42
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AAI clade 9-3-11
medoid: 3300014060 46
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AAI clade 9-3-12
medoid: 3300017532 74
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AAI clade 9-3-13
medoid: 3300024060 37
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AAI clade 9-3-14
medoid: 3300024344 32
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AAI clade 9-3-15
medoid: 3300025897 50
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AAI clade 9-3-16
medoid: 3300027649 30
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AAI clade 9-3-17
medoid: 3300027733 31
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AAI clade 9-3-18
medoid: 3300027749 23
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AAI clade 9-3-19
medoid: 3300027770 28
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AAI clade 9-3-20
medoid: 3300027799 6
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AAI clade 9-3-21
medoid: 3300027815 25
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AAI clade 9-3-22
medoid: 3300027815 33
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AAI clade 9-3-23
medoid: 3300027815 68
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AAI clade 9-3-24
medoid: 3300027832 34
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AAI clade 9-3-25
medoid: 3300027845 19
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AAI clade 9-3-26
medoid: 3300027878 63
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AAI clade 9-3-27
medoid: wastewater GEMS 3300012956 82
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AAI clade 9-3-28
medoid: wastewater GEMS 3300009540 46
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AAI clade 9-3-29
medoid: wastewater GEMS 3300026516 57
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AAI clade 9-3-30
medoid: wastewater singleton GCA 016717525 1 ASM1671752v1 genomic
2 datasets: wastewater GEMS 3300029239 9 (AAI: 67.15%) and wastewater singleton GCA 016717525 1 ASM1671752v1 genomic (AAI: 100.0%)
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AAI clade 9-3-31
medoid: wastewater singleton GCA 016699915 1 ASM1669991v1 genomic
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AAI clade 9-3-32
medoid: wastewater singleton GCA 016703745 1 ASM1670374v1 genomic
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AAI clade 9-3-33
medoid: wastewater ye ASMAG563
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AAI clade 9-3-34
medoid: wastewater singleton GCA 016716325 1 ASM1671632v1 genomic
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AAI clade 9-3-35
medoid: wastewater ye ASMAG1253
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AAI clade 9-3-36
medoid: wastewater ye ASMAG1328
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AAI clade 9-3-37
medoid: wastewater ye ASMAG1666
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AAI clade 9-3-38
medoid: wastewater ye ASMAG1753
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AAI clade 9-3-39
medoid: wastewater ye ASMAG1913
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AAI clade 9-3-40
medoid: wastewater ye ASMAG1996
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AAI clade 9-3-41
medoid: wastewater ye ASMAG836
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AAI clade 9-3-42
medoid: WRFA trim metabat 3
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AAI clade 9-3-1
medoid: 3300017434 28
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AAI clade 9-4
medoid: human MGYG000002703
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AAI clade 9-5
medoid: 3300025437 3
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AAI clade 9-6
medoid: 3300024955 6
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AAI clade 9-7
medoid: 3300024953 8
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AAI clade 9-8
medoid: wastewater singleton GCA 016716965 1 ASM1671696v1 genomic
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AAI clade 9-1
medoid: human MGYG000003836
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AAI clade 10
medoid: 3300017423 5
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AAI clade 11
medoid: pig GCA 946405745 1
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AAI clade 12
medoid: 3300006192 20
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AAI clade 13
medoid: pig LW1 s150947 bin 23
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AAI clade 14
medoid: dog Snoopy p1 metabat2 high PE 009
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AAI clade 15
medoid: pig MGYG000302081
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AAI clade 16
medoid: human MGYG000000545
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AAI clade 17
medoid: human MGYG000003895
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AAI clade 18
medoid: chicken MGYG000313561
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AAI clade 19
medoid: 3300024912 1
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AAI clade 20
medoid: human MGYG000002619
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AAI clade 21
medoid: human MGYG000002428
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AAI clade 22
medoid: 3300027805 13
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AAI clade 23
medoid: chicken MGYG000314833
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AAI clade 24
medoid: wastewater GEMS 3300027794 31
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AAI clade 25
medoid: human MGYG000004406
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AAI clade 26
medoid: pig MGYG000301788
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AAI clade 27
medoid: 3300027834 52
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AAI clade 28
medoid: 3300020389 13
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AAI clade 29
medoid: 3300027835 270
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AAI clade 30
medoid: 3300013004 97
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AAI clade 31
medoid: 3300025065 6
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AAI clade 32
medoid: human MGYG000004800
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AAI clade 33
medoid: ruminant GCA 015060255 1
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AAI clade 34
medoid: chicken GCA 019115885 1
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AAI clade 35
medoid: pig SAMEA3663026 metabat2 high PE 017
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AAI clade 36
medoid: human MGYG000000998
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AAI clade 37
medoid: 3300012919 27
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AAI clade 38
medoid: 3300027851 42
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AAI clade 39
medoid: wastewater ye ASMAG566