AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: human MGYG000000946
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AAI clade 2
medoid: human MGYG000000019
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AAI clade 3
medoid: human MGYG000003370
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AAI clade 4
medoid: 3300027323 37
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AAI clade 5
medoid: human MGYG000004185
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AAI clade 5-1
medoid: human MGYG000004479
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AAI clade 5-2
medoid: chicken GCA 020743895 1
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AAI clade 5-3
medoid: human MGYG000000224
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AAI clade 5-4
medoid: human MGYG000000013
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AAI clade 5-5
medoid: human MGYG000000692
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AAI clade 5-6
medoid: human MGYG000000203
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AAI clade 5-7
medoid: chicken GCA 020743855 1
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AAI clade 5-8
medoid: human MGYG000003194
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AAI clade 5-9
medoid: 3300000497 3
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AAI clade 5-10
medoid: wastewater GEMS 3300025691 113
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AAI clade 5-11
medoid: chicken MGYG000313199
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AAI clade 5-12
medoid: human MGYG000000415
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AAI clade 5-13
medoid: human MGYG000002275
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AAI clade 5-13-1
medoid: human MGYG000004824
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AAI clade 5-13-2
medoid: pig MGYG000301880
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AAI clade 5-13-3
medoid: human MGYG000002275
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AAI clade 5-13-4
medoid: pig MGYG000302234
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AAI clade 5-13-5
medoid: human MGYG000002540
5 datasets: human MGYG000000854 (AAI: 72.33%), human MGYG000001372 (AAI: 94.14%), human MGYG000001659 (AAI: 66.87%), human MGYG000001886 (AAI: 68.59%), and human MGYG000002540 (AAI: 100.0%)
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AAI clade 5-13-6
medoid: human MGYG000002575
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AAI clade 5-13-7
medoid: human MGYG000003608
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AAI clade 5-13-8
medoid: human MGYG000003650
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AAI clade 5-13-9
medoid: human MGYG000003992
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AAI clade 5-13-10
medoid: pig Duroc Low4 bin 19
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AAI clade 5-13-11
medoid: pig GCA 016292545 1
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AAI clade 5-13-12
medoid: pig MGYG000300532
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AAI clade 5-13-13
medoid: pig MGYG000300652
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AAI clade 5-13-14
medoid: pig MGYG000300715
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AAI clade 5-13-15
medoid: pig MGYG000303148
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AAI clade 5-13-16
medoid: ruminant GCA 015060555 1
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AAI clade 5-13-17
medoid: ruminant X129 Alpine Ibex metabat2 low PE 007
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AAI clade 5-13-1
medoid: human MGYG000004824
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AAI clade 5-14
medoid: ruminant GCA 015061315 1
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AAI clade 5-15
medoid: human MGYG000001644
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AAI clade 5-16
medoid: human MGYG000004483
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AAI clade 5-17
medoid: human MGYG000004430
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AAI clade 5-18
medoid: human MGYG000000348
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AAI clade 5-19
medoid: pig MGYG000301110
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AAI clade 5-20
medoid: human MGYG000000357
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AAI clade 5-21
medoid: pig MGYG000301341
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AAI clade 5-22
medoid: pig Boar s14 bin 25
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AAI clade 5-23
medoid: human MGYG000003559
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AAI clade 5-24
medoid: pig SAMEA3663273 metabat2 low PE 017
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AAI clade 5-25
medoid: pig MGYG000302429
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AAI clade 5-26
medoid: pig GCA 016295645 1
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AAI clade 5-27
medoid: 3300013133 48
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AAI clade 5-28
medoid: 3300021135 4
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AAI clade 5-29
medoid: 3300017418 7
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AAI clade 5-30
medoid: human MGYG000000764
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AAI clade 5-31
medoid: human MGYG000001211
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AAI clade 5-32
medoid: pig Boar s5 bin 31
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AAI clade 5-1
medoid: human MGYG000004479
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AAI clade 6
medoid: human MGYG000001010
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AAI clade 7
medoid: wastewater GEMS 3300025861 51
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AAI clade 8
medoid: human MGYG000002603
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AAI clade 9
medoid: 3300024953 8
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AAI clade 10
medoid: 3300017423 5
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AAI clade 11
medoid: pig GCA 946405745 1
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AAI clade 12
medoid: 3300006192 20
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AAI clade 13
medoid: pig LW1 s150947 bin 23
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AAI clade 14
medoid: dog Snoopy p1 metabat2 high PE 009
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AAI clade 15
medoid: pig MGYG000302081
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AAI clade 16
medoid: human MGYG000000545
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AAI clade 17
medoid: human MGYG000003895
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AAI clade 18
medoid: chicken MGYG000313561
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AAI clade 19
medoid: 3300024912 1
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AAI clade 20
medoid: human MGYG000002619
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AAI clade 21
medoid: human MGYG000002428
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AAI clade 22
medoid: 3300027805 13
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AAI clade 23
medoid: chicken MGYG000314833
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AAI clade 24
medoid: wastewater GEMS 3300027794 31
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AAI clade 25
medoid: human MGYG000004406
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AAI clade 26
medoid: pig MGYG000301788
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AAI clade 27
medoid: 3300027834 52
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AAI clade 28
medoid: 3300020389 13
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AAI clade 29
medoid: 3300027835 270
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AAI clade 30
medoid: 3300013004 97
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AAI clade 31
medoid: 3300025065 6
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AAI clade 32
medoid: human MGYG000004800
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AAI clade 33
medoid: ruminant GCA 015060255 1
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AAI clade 34
medoid: chicken GCA 019115885 1
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AAI clade 35
medoid: pig SAMEA3663026 metabat2 high PE 017
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AAI clade 36
medoid: human MGYG000000998
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AAI clade 37
medoid: 3300012919 27
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AAI clade 38
medoid: 3300027851 42
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AAI clade 39
medoid: wastewater ye ASMAG566