AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: human MGYG000000946
  • AAI clade 2 medoid: human MGYG000000019
  • AAI clade 3 medoid: human MGYG000003370
  • AAI clade 4 medoid: 3300027323 37
  • AAI clade 5 medoid: human MGYG000004185
    • AAI clade 5-1 medoid: human MGYG000004479
    • AAI clade 5-2 medoid: chicken GCA 020743895 1
    • AAI clade 5-3 medoid: human MGYG000000224
    • AAI clade 5-4 medoid: human MGYG000000013
    • AAI clade 5-5 medoid: human MGYG000000692
    • AAI clade 5-6 medoid: human MGYG000000203
    • AAI clade 5-7 medoid: chicken GCA 020743855 1
    • AAI clade 5-8 medoid: human MGYG000003194
    • AAI clade 5-9 medoid: 3300000497 3
    • AAI clade 5-10 medoid: wastewater GEMS 3300025691 113
    • AAI clade 5-11 medoid: chicken MGYG000313199
    • AAI clade 5-12 medoid: human MGYG000000415
    • AAI clade 5-13 medoid: human MGYG000002275
      • AAI clade 5-13-1 medoid: human MGYG000004824
      • AAI clade 5-13-2 medoid: pig MGYG000301880
      • AAI clade 5-13-3 medoid: human MGYG000002275
      • AAI clade 5-13-4 medoid: pig MGYG000302234
        2 datasets: human MGYG000000682 (AAI: 70.34%) and pig MGYG000302234 (AAI: 100.0%)
      • AAI clade 5-13-5 medoid: human MGYG000002540
      • AAI clade 5-13-6 medoid: human MGYG000002575
      • AAI clade 5-13-7 medoid: human MGYG000003608
      • AAI clade 5-13-8 medoid: human MGYG000003650
      • AAI clade 5-13-9 medoid: human MGYG000003992
      • AAI clade 5-13-10 medoid: pig Duroc Low4 bin 19
      • AAI clade 5-13-11 medoid: pig GCA 016292545 1
      • AAI clade 5-13-12 medoid: pig MGYG000300532
      • AAI clade 5-13-13 medoid: pig MGYG000300652
      • AAI clade 5-13-14 medoid: pig MGYG000300715
      • AAI clade 5-13-15 medoid: pig MGYG000303148
      • AAI clade 5-13-16 medoid: ruminant GCA 015060555 1
      • AAI clade 5-13-17 medoid: ruminant X129 Alpine Ibex metabat2 low PE 007
    • AAI clade 5-14 medoid: ruminant GCA 015061315 1
    • AAI clade 5-15 medoid: human MGYG000001644
    • AAI clade 5-16 medoid: human MGYG000004483
    • AAI clade 5-17 medoid: human MGYG000004430
    • AAI clade 5-18 medoid: human MGYG000000348
    • AAI clade 5-19 medoid: pig MGYG000301110
    • AAI clade 5-20 medoid: human MGYG000000357
    • AAI clade 5-21 medoid: pig MGYG000301341
    • AAI clade 5-22 medoid: pig Boar s14 bin 25
    • AAI clade 5-23 medoid: human MGYG000003559
    • AAI clade 5-24 medoid: pig SAMEA3663273 metabat2 low PE 017
    • AAI clade 5-25 medoid: pig MGYG000302429
    • AAI clade 5-26 medoid: pig GCA 016295645 1
    • AAI clade 5-27 medoid: 3300013133 48
    • AAI clade 5-28 medoid: 3300021135 4
    • AAI clade 5-29 medoid: 3300017418 7
    • AAI clade 5-30 medoid: human MGYG000000764
    • AAI clade 5-31 medoid: human MGYG000001211
    • AAI clade 5-32 medoid: pig Boar s5 bin 31
  • AAI clade 6 medoid: human MGYG000001010
  • AAI clade 7 medoid: wastewater GEMS 3300025861 51
  • AAI clade 8 medoid: human MGYG000002603
  • AAI clade 9 medoid: 3300024953 8
  • AAI clade 10 medoid: 3300017423 5
  • AAI clade 11 medoid: pig GCA 946405745 1
  • AAI clade 12 medoid: 3300006192 20
  • AAI clade 13 medoid: pig LW1 s150947 bin 23
  • AAI clade 14 medoid: dog Snoopy p1 metabat2 high PE 009
  • AAI clade 15 medoid: pig MGYG000302081
  • AAI clade 16 medoid: human MGYG000000545
  • AAI clade 17 medoid: human MGYG000003895
  • AAI clade 18 medoid: chicken MGYG000313561
  • AAI clade 19 medoid: 3300024912 1
  • AAI clade 20 medoid: human MGYG000002619
  • AAI clade 21 medoid: human MGYG000002428
  • AAI clade 22 medoid: 3300027805 13
  • AAI clade 23 medoid: chicken MGYG000314833
  • AAI clade 24 medoid: wastewater GEMS 3300027794 31
  • AAI clade 25 medoid: human MGYG000004406
  • AAI clade 26 medoid: pig MGYG000301788
  • AAI clade 27 medoid: 3300027834 52
  • AAI clade 28 medoid: 3300020389 13
  • AAI clade 29 medoid: 3300027835 270
  • AAI clade 30 medoid: 3300013004 97
  • AAI clade 31 medoid: 3300025065 6
  • AAI clade 32 medoid: human MGYG000004800
  • AAI clade 33 medoid: ruminant GCA 015060255 1
  • AAI clade 34 medoid: chicken GCA 019115885 1
  • AAI clade 35 medoid: pig SAMEA3663026 metabat2 high PE 017
  • AAI clade 36 medoid: human MGYG000000998
  • AAI clade 37 medoid: 3300012919 27
  • AAI clade 38 medoid: 3300027851 42
  • AAI clade 39 medoid: wastewater ye ASMAG566