AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: human MGYG000000946
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AAI clade 2
medoid: human MGYG000000019
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AAI clade 3
medoid: human MGYG000003370
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AAI clade 4
medoid: 3300027323 37
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AAI clade 5
medoid: human MGYG000004185
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AAI clade 6
medoid: human MGYG000001010
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AAI clade 7
medoid: wastewater GEMS 3300025861 51
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AAI clade 8
medoid: human MGYG000002603
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AAI clade 9
medoid: 3300024953 8
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AAI clade 10
medoid: 3300017423 5
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AAI clade 11
medoid: pig GCA 946405745 1
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AAI clade 12
medoid: 3300006192 20
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AAI clade 13
medoid: pig LW1 s150947 bin 23
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AAI clade 14
medoid: dog Snoopy p1 metabat2 high PE 009
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AAI clade 15
medoid: pig MGYG000302081
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AAI clade 16
medoid: human MGYG000000545
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AAI clade 17
medoid: human MGYG000003895
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AAI clade 18
medoid: chicken MGYG000313561
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AAI clade 19
medoid: 3300024912 1
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AAI clade 20
medoid: human MGYG000002619
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AAI clade 21
medoid: human MGYG000002428
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AAI clade 22
medoid: 3300027805 13
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AAI clade 23
medoid: chicken MGYG000314833
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AAI clade 24
medoid: wastewater GEMS 3300027794 31
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AAI clade 25
medoid: human MGYG000004406
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AAI clade 26
medoid: pig MGYG000301788
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AAI clade 27
medoid: 3300027834 52
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AAI clade 28
medoid: 3300020389 13
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AAI clade 29
medoid: 3300027835 270
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AAI clade 30
medoid: 3300013004 97
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AAI clade 31
medoid: 3300025065 6
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AAI clade 32
medoid: human MGYG000004800
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AAI clade 33
medoid: ruminant GCA 015060255 1
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AAI clade 34
medoid: chicken GCA 019115885 1
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AAI clade 35
medoid: pig SAMEA3663026 metabat2 high PE 017
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AAI clade 36
medoid: human MGYG000000998
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AAI clade 37
medoid: 3300012919 27
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AAI clade 38
medoid: 3300027851 42
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AAI clade 39
medoid: wastewater ye ASMAG566
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AAI clade 39-1
medoid: wastewater GEMS 3300027786 25
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AAI clade 39-1-1
medoid: wastewater GEMS 3300027786 25
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AAI clade 39-1-1-1
medoid: 3300000313 10
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AAI clade 39-1-1-2
medoid: 3300009083 99
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AAI clade 39-1-1-3
medoid: 3300012046 4
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AAI clade 39-1-1-4
medoid: 3300013004 24
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AAI clade 39-1-1-5
medoid: 3300024928 1
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AAI clade 39-1-1-6
medoid: 3300013093 14
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AAI clade 39-1-1-7
medoid: 3300013093 27
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AAI clade 39-1-1-8
medoid: 3300013093 7
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AAI clade 39-1-1-9
medoid: 3300017416 3
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AAI clade 39-1-1-10
medoid: 3300017453 13
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AAI clade 39-1-1-11
medoid: 3300027975 13
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AAI clade 39-1-1-12
medoid: wastewater GEMS 3300026299 11
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AAI clade 39-1-1-13
medoid: 3300017509 18
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AAI clade 39-1-1-14
medoid: 3300021093 31
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AAI clade 39-1-1-15
medoid: 3300021341 14
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AAI clade 39-1-1-16
medoid: 3300022602 23
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AAI clade 39-1-1-17
medoid: 3300027756 12
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AAI clade 39-1-1-18
medoid: wastewater singleton GCA 016713085 1 ASM1671308v1 genomic
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AAI clade 39-1-1-19
medoid: 3300025375 1
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AAI clade 39-1-1-20
medoid: 3300027220 2
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AAI clade 39-1-1-21
medoid: 3300025428 4
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AAI clade 39-1-1-22
medoid: 3300027733 32
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AAI clade 39-1-1-23
medoid: 3300027728 25
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AAI clade 39-1-1-24
medoid: wastewater singleton GCA 016706595 1 ASM1670659v1 genomic
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AAI clade 39-1-1-25
medoid: 3300027870 31
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AAI clade 39-1-1-26
medoid: 3300027878 32
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AAI clade 39-1-1-27
medoid: wastewater GEMS 3300003281 5
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AAI clade 39-1-1-28
medoid: wastewater GEMS 3300023187 6
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AAI clade 39-1-1-29
medoid: wastewater GEMS 3300026283 13
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AAI clade 39-1-1-30
medoid: wastewater GEMS 3300026302 15
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AAI clade 39-1-1-31
medoid: wastewater GEMS 3300027673 19
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AAI clade 39-1-1-32
medoid: wastewater singleton GCA 016709625 1 ASM1670962v1 genomic
2 datasets: wastewater singleton GCA 016709625 1 ASM1670962v1 genomic (AAI: 100.0%) and wastewater singleton GCA 016718755 1 ASM1671875v1 genomic (AAI: 69.8%)
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AAI clade 39-1-1-33
medoid: wastewater singleton GCA 016715505 1 ASM1671550v1 genomic
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AAI clade 39-1-1-34
medoid: wastewater ye ASMAG1080
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AAI clade 39-1-1-35
medoid: wastewater ye ASMAG1402
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AAI clade 39-1-1-36
medoid: wastewater ye ASMAG1985
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AAI clade 39-1-1-37
medoid: wastewater ye ASMAG573
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AAI clade 39-1-1-38
medoid: wastewater ye ASMAG599
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AAI clade 39-1-1-39
medoid: wastewater ye ASMAG879
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AAI clade 39-1-1-40
medoid: wastewater ye ASMAG941
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AAI clade 39-1-1-1
medoid: 3300000313 10
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AAI clade 39-1-2
medoid: wastewater singleton GCA 016704325 1 ASM1670432v1 genomic
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AAI clade 39-1-3
medoid: wastewater ye ASMAG1828
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AAI clade 39-1-1
medoid: wastewater GEMS 3300027786 25
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AAI clade 39-2
medoid: wastewater ye ASMAG566
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AAI clade 39-3
medoid: wastewater ye ASMAG309
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AAI clade 39-1
medoid: wastewater GEMS 3300027786 25