AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: human MGYG000000946
  • AAI clade 2 medoid: human MGYG000000019
  • AAI clade 3 medoid: human MGYG000003370
  • AAI clade 4 medoid: 3300027323 37
  • AAI clade 5 medoid: human MGYG000004185
  • AAI clade 6 medoid: human MGYG000001010
  • AAI clade 7 medoid: wastewater GEMS 3300025861 51
  • AAI clade 8 medoid: human MGYG000002603
  • AAI clade 9 medoid: 3300024953 8
  • AAI clade 10 medoid: 3300017423 5
  • AAI clade 11 medoid: pig GCA 946405745 1
  • AAI clade 12 medoid: 3300006192 20
  • AAI clade 13 medoid: pig LW1 s150947 bin 23
  • AAI clade 14 medoid: dog Snoopy p1 metabat2 high PE 009
  • AAI clade 15 medoid: pig MGYG000302081
  • AAI clade 16 medoid: human MGYG000000545
  • AAI clade 17 medoid: human MGYG000003895
  • AAI clade 18 medoid: chicken MGYG000313561
  • AAI clade 19 medoid: 3300024912 1
  • AAI clade 20 medoid: human MGYG000002619
  • AAI clade 21 medoid: human MGYG000002428
  • AAI clade 22 medoid: 3300027805 13
  • AAI clade 23 medoid: chicken MGYG000314833
  • AAI clade 24 medoid: wastewater GEMS 3300027794 31
  • AAI clade 25 medoid: human MGYG000004406
  • AAI clade 26 medoid: pig MGYG000301788
  • AAI clade 27 medoid: 3300027834 52
  • AAI clade 28 medoid: 3300020389 13
  • AAI clade 29 medoid: 3300027835 270
  • AAI clade 30 medoid: 3300013004 97
  • AAI clade 31 medoid: 3300025065 6
  • AAI clade 32 medoid: human MGYG000004800
  • AAI clade 33 medoid: ruminant GCA 015060255 1
  • AAI clade 34 medoid: chicken GCA 019115885 1
  • AAI clade 35 medoid: pig SAMEA3663026 metabat2 high PE 017
  • AAI clade 36 medoid: human MGYG000000998
  • AAI clade 37 medoid: 3300012919 27
  • AAI clade 38 medoid: 3300027851 42
  • AAI clade 39 medoid: wastewater ye ASMAG566
    • AAI clade 39-1 medoid: wastewater GEMS 3300027786 25
      • AAI clade 39-1-1 medoid: wastewater GEMS 3300027786 25
        • AAI clade 39-1-1-1 medoid: 3300000313 10
        • AAI clade 39-1-1-2 medoid: 3300009083 99
        • AAI clade 39-1-1-3 medoid: 3300012046 4
        • AAI clade 39-1-1-4 medoid: 3300013004 24
        • AAI clade 39-1-1-5 medoid: 3300024928 1
        • AAI clade 39-1-1-6 medoid: 3300013093 14
        • AAI clade 39-1-1-7 medoid: 3300013093 27
        • AAI clade 39-1-1-8 medoid: 3300013093 7
        • AAI clade 39-1-1-9 medoid: 3300017416 3
        • AAI clade 39-1-1-10 medoid: 3300017453 13
        • AAI clade 39-1-1-11 medoid: 3300027975 13
        • AAI clade 39-1-1-12 medoid: wastewater GEMS 3300026299 11
        • AAI clade 39-1-1-13 medoid: 3300017509 18
        • AAI clade 39-1-1-14 medoid: 3300021093 31
          2 datasets: 3300017788 40 (AAI: 65.66%) and 3300021093 31 (AAI: 100.0%)
        • AAI clade 39-1-1-15 medoid: 3300021341 14
        • AAI clade 39-1-1-16 medoid: 3300022602 23
        • AAI clade 39-1-1-17 medoid: 3300027756 12
        • AAI clade 39-1-1-18 medoid: wastewater singleton GCA 016713085 1 ASM1671308v1 genomic
        • AAI clade 39-1-1-19 medoid: 3300025375 1
        • AAI clade 39-1-1-20 medoid: 3300027220 2
        • AAI clade 39-1-1-21 medoid: 3300025428 4
        • AAI clade 39-1-1-22 medoid: 3300027733 32
        • AAI clade 39-1-1-23 medoid: 3300027728 25
        • AAI clade 39-1-1-24 medoid: wastewater singleton GCA 016706595 1 ASM1670659v1 genomic
        • AAI clade 39-1-1-25 medoid: 3300027870 31
        • AAI clade 39-1-1-26 medoid: 3300027878 32
        • AAI clade 39-1-1-27 medoid: wastewater GEMS 3300003281 5
        • AAI clade 39-1-1-28 medoid: wastewater GEMS 3300023187 6
        • AAI clade 39-1-1-29 medoid: wastewater GEMS 3300026283 13
        • AAI clade 39-1-1-30 medoid: wastewater GEMS 3300026302 15
        • AAI clade 39-1-1-31 medoid: wastewater GEMS 3300027673 19
        • AAI clade 39-1-1-32 medoid: wastewater singleton GCA 016709625 1 ASM1670962v1 genomic
        • AAI clade 39-1-1-33 medoid: wastewater singleton GCA 016715505 1 ASM1671550v1 genomic
        • AAI clade 39-1-1-34 medoid: wastewater ye ASMAG1080
        • AAI clade 39-1-1-35 medoid: wastewater ye ASMAG1402
        • AAI clade 39-1-1-36 medoid: wastewater ye ASMAG1985
        • AAI clade 39-1-1-37 medoid: wastewater ye ASMAG573
        • AAI clade 39-1-1-38 medoid: wastewater ye ASMAG599
        • AAI clade 39-1-1-39 medoid: wastewater ye ASMAG879
        • AAI clade 39-1-1-40 medoid: wastewater ye ASMAG941
      • AAI clade 39-1-2 medoid: wastewater singleton GCA 016704325 1 ASM1670432v1 genomic
      • AAI clade 39-1-3 medoid: wastewater ye ASMAG1828
    • AAI clade 39-2 medoid: wastewater ye ASMAG566
    • AAI clade 39-3 medoid: wastewater ye ASMAG309