AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: human MGYG000000946
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AAI clade 2
medoid: human MGYG000000019
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AAI clade 3
medoid: human MGYG000003370
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AAI clade 4
medoid: 3300027323 37
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AAI clade 5
medoid: human MGYG000004185
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AAI clade 6
medoid: human MGYG000001010
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AAI clade 7
medoid: wastewater GEMS 3300025861 51
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AAI clade 8
medoid: human MGYG000002603
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AAI clade 9
medoid: 3300024953 8
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AAI clade 10
medoid: 3300017423 5
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AAI clade 11
medoid: pig GCA 946405745 1
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AAI clade 12
medoid: 3300006192 20
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AAI clade 13
medoid: pig LW1 s150947 bin 23
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AAI clade 14
medoid: dog Snoopy p1 metabat2 high PE 009
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AAI clade 15
medoid: pig MGYG000302081
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AAI clade 16
medoid: human MGYG000000545
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AAI clade 17
medoid: human MGYG000003895
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AAI clade 18
medoid: chicken MGYG000313561
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AAI clade 19
medoid: 3300024912 1
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AAI clade 20
medoid: human MGYG000002619
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AAI clade 21
medoid: human MGYG000002428
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AAI clade 22
medoid: 3300027805 13
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AAI clade 23
medoid: chicken MGYG000314833
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AAI clade 24
medoid: wastewater GEMS 3300027794 31
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AAI clade 25
medoid: human MGYG000004406
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AAI clade 26
medoid: pig MGYG000301788
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AAI clade 27
medoid: 3300027834 52
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AAI clade 28
medoid: 3300020389 13
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AAI clade 29
medoid: 3300027835 270
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AAI clade 30
medoid: 3300013004 97
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AAI clade 31
medoid: 3300025065 6
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AAI clade 31-1
medoid: 3300022747 7
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AAI clade 31-2
medoid: 3300025252 3
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AAI clade 31-2-1
medoid: 3300000318 11
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AAI clade 31-2-2
medoid: 3300000497 2
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AAI clade 31-2-3
medoid: 3300005043 12
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AAI clade 31-2-4
medoid: 3300025114 5
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AAI clade 31-2-5
medoid: 3300025252 3
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AAI clade 31-2-6
medoid: wastewater singleton GCA 016713105 1 ASM1671310v1 genomic
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AAI clade 31-2-7
medoid: 3300009702 50
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AAI clade 31-2-8
medoid: wastewater ye ASMAG1756
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AAI clade 31-2-9
medoid: 3300022752 35
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AAI clade 31-2-10
medoid: 3300025640 14
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AAI clade 31-2-11
medoid: 3300025277 3
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AAI clade 31-2-12
medoid: 3300014962 1
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AAI clade 31-2-13
medoid: 3300027870 32
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AAI clade 31-2-14
medoid: 3300020440 40
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AAI clade 31-2-15
medoid: 3300027980 33
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AAI clade 31-2-16
medoid: 3300018428 54
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AAI clade 31-2-17
medoid: 3300027858 50
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AAI clade 31-2-18
medoid: 3300020213 34
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AAI clade 31-2-19
medoid: 3300020393 29
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AAI clade 31-2-20
medoid: 3300020417 14
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AAI clade 31-2-21
medoid: 3300022745 4
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AAI clade 31-2-22
medoid: 3300021341 20
7 datasets: 3300020429 9 (AAI: 85.29%), 3300021341 20 (AAI: 100.0%), 3300025039 7 (AAI: 66.37%), 3300025282 4 (AAI: 67.41%), 3300027790 26 (AAI: 66.26%), 3300027852 44 (AAI: 57.88%), and wastewater singleton GCA 016712445 1 ASM1671244v1 genomic (AAI: 62.56%)
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AAI clade 31-2-23
medoid: 3300020460 8
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AAI clade 31-2-24
medoid: 3300020601 31
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AAI clade 31-2-25
medoid: 3300021343 17
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AAI clade 31-2-26
medoid: 3300027607 33
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AAI clade 31-2-27
medoid: 3300025506 5
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AAI clade 31-2-28
medoid: 3300025684 37
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AAI clade 31-2-29
medoid: 3300027685 13
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AAI clade 31-2-30
medoid: 3300025838 36
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AAI clade 31-2-31
medoid: 3300028284 9
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AAI clade 31-2-32
medoid: 3300026519 37
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AAI clade 31-2-33
medoid: wastewater GEMS 3300026299 9
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AAI clade 31-2-34
medoid: 3300027828 54
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AAI clade 31-2-35
medoid: 3300027822 21
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AAI clade 31-2-36
medoid: 3300027980 37
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AAI clade 31-2-37
medoid: 3300027851 43
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AAI clade 31-2-38
medoid: 3300027851 72
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AAI clade 31-2-39
medoid: 3300027980 25
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AAI clade 31-2-40
medoid: chicken LBJMI02800 metabat2 high PE 016
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AAI clade 31-2-41
medoid: wastewater GEMS 3300026516 43
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AAI clade 31-2-42
medoid: wastewater ye ASMAG556
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AAI clade 31-2-43
medoid: wastewater ye ASMAG612
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AAI clade 31-2-1
medoid: 3300000318 11
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AAI clade 31-3
medoid: 3300025065 6
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AAI clade 31-1
medoid: 3300022747 7
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AAI clade 32
medoid: human MGYG000004800
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AAI clade 33
medoid: ruminant GCA 015060255 1
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AAI clade 34
medoid: chicken GCA 019115885 1
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AAI clade 35
medoid: pig SAMEA3663026 metabat2 high PE 017
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AAI clade 36
medoid: human MGYG000000998
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AAI clade 37
medoid: 3300012919 27
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AAI clade 38
medoid: 3300027851 42
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AAI clade 39
medoid: wastewater ye ASMAG566