AAI clade 31-2 | MiGA Online

AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

AAI clade 1 medoid: human MGYG000000946
AAI clade 2 medoid: human MGYG000000019
AAI clade 3 medoid: human MGYG000003370
AAI clade 4 medoid: 3300027323 37
AAI clade 5 medoid: human MGYG000004185
AAI clade 6 medoid: human MGYG000001010
AAI clade 7 medoid: wastewater GEMS 3300025861 51
AAI clade 8 medoid: human MGYG000002603
AAI clade 9 medoid: 3300024953 8
AAI clade 10 medoid: 3300017423 5
AAI clade 11 medoid: pig GCA 946405745 1
AAI clade 12 medoid: 3300006192 20
AAI clade 13 medoid: pig LW1 s150947 bin 23
AAI clade 14 medoid: dog Snoopy p1 metabat2 high PE 009
AAI clade 15 medoid: pig MGYG000302081
AAI clade 16 medoid: human MGYG000000545
AAI clade 17 medoid: human MGYG000003895
AAI clade 18 medoid: chicken MGYG000313561
AAI clade 19 medoid: 3300024912 1
AAI clade 20 medoid: human MGYG000002619
AAI clade 21 medoid: human MGYG000002428
AAI clade 22 medoid: 3300027805 13
AAI clade 23 medoid: chicken MGYG000314833
AAI clade 24 medoid: wastewater GEMS 3300027794 31
AAI clade 25 medoid: human MGYG000004406
AAI clade 26 medoid: pig MGYG000301788
AAI clade 27 medoid: 3300027834 52
AAI clade 28 medoid: 3300020389 13
AAI clade 29 medoid: 3300027835 270
AAI clade 30 medoid: 3300013004 97
AAI clade 31 medoid: 3300025065 6
- AAI clade 31-1 medoid: 3300022747 7
- AAI clade 31-2 medoid: 3300025252 3
  - AAI clade 31-2-1 medoid: 3300000318 11
  - AAI clade 31-2-2 medoid: 3300000497 2
  - AAI clade 31-2-3 medoid: 3300005043 12
  - AAI clade 31-2-4 medoid: 3300025114 5
  - AAI clade 31-2-5 medoid: 3300025252 3
  - AAI clade 31-2-6 medoid: wastewater singleton GCA 016713105 1 ASM1671310v1 genomic
  - AAI clade 31-2-7 medoid: 3300009702 50
  - AAI clade 31-2-8 medoid: wastewater ye ASMAG1756
  - AAI clade 31-2-9 medoid: 3300022752 35
  - AAI clade 31-2-10 medoid: 3300025640 14
  - AAI clade 31-2-11 medoid: 3300025277 3
  - AAI clade 31-2-12 medoid: 3300014962 1
  - AAI clade 31-2-13 medoid: 3300027870 32
  - AAI clade 31-2-14 medoid: 3300020440 40
  - AAI clade 31-2-15 medoid: 3300027980 33
  - AAI clade 31-2-16 medoid: 3300018428 54
  - AAI clade 31-2-17 medoid: 3300027858 50
  - AAI clade 31-2-18 medoid: 3300020213 34
  - AAI clade 31-2-19 medoid: 3300020393 29
  - AAI clade 31-2-20 medoid: 3300020417 14
  - AAI clade 31-2-21 medoid: 3300022745 4
  - AAI clade 31-2-22 medoid: 3300021341 20
  - AAI clade 31-2-23 medoid: 3300020460 8
  - AAI clade 31-2-24 medoid: 3300020601 31
  - AAI clade 31-2-25 medoid: 3300021343 17
  - AAI clade 31-2-26 medoid: 3300027607 33
  - AAI clade 31-2-27 medoid: 3300025506 5
  - AAI clade 31-2-28 medoid: 3300025684 37
  - AAI clade 31-2-29 medoid: 3300027685 13
  - AAI clade 31-2-30 medoid: 3300025838 36
  - AAI clade 31-2-31 medoid: 3300028284 9
  - AAI clade 31-2-32 medoid: 3300026519 37
  - AAI clade 31-2-33 medoid: wastewater GEMS 3300026299 9
  - AAI clade 31-2-34 medoid: 3300027828 54
  - AAI clade 31-2-35 medoid: 3300027822 21
  - AAI clade 31-2-36 medoid: 3300027980 37
  - AAI clade 31-2-37 medoid: 3300027851 43
  - AAI clade 31-2-38 medoid: 3300027851 72
  - AAI clade 31-2-39 medoid: 3300027980 25
  - AAI clade 31-2-40 medoid: chicken LBJMI02800 metabat2 high PE 016
  - AAI clade 31-2-41 medoid: wastewater GEMS 3300026516 43
  - AAI clade 31-2-42 medoid: wastewater ye ASMAG556
  - AAI clade 31-2-43 medoid: wastewater ye ASMAG612
- AAI clade 31-3 medoid: 3300025065 6
AAI clade 32 medoid: human MGYG000004800
AAI clade 33 medoid: ruminant GCA 015060255 1
AAI clade 34 medoid: chicken GCA 019115885 1
AAI clade 35 medoid: pig SAMEA3663026 metabat2 high PE 017
AAI clade 36 medoid: human MGYG000000998
AAI clade 37 medoid: 3300012919 27
AAI clade 38 medoid: 3300027851 42
AAI clade 39 medoid: wastewater ye ASMAG566

AAI-based medoid clustering

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