AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: human MGYG000000946
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AAI clade 2
medoid: human MGYG000000019
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AAI clade 3
medoid: human MGYG000003370
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AAI clade 4
medoid: 3300027323 37
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AAI clade 5
medoid: human MGYG000004185
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AAI clade 6
medoid: human MGYG000001010
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AAI clade 7
medoid: wastewater GEMS 3300025861 51
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AAI clade 8
medoid: human MGYG000002603
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AAI clade 9
medoid: 3300024953 8
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AAI clade 10
medoid: 3300017423 5
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AAI clade 11
medoid: pig GCA 946405745 1
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AAI clade 12
medoid: 3300006192 20
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AAI clade 13
medoid: pig LW1 s150947 bin 23
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AAI clade 14
medoid: dog Snoopy p1 metabat2 high PE 009
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AAI clade 15
medoid: pig MGYG000302081
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AAI clade 16
medoid: human MGYG000000545
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AAI clade 17
medoid: human MGYG000003895
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AAI clade 18
medoid: chicken MGYG000313561
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AAI clade 19
medoid: 3300024912 1
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AAI clade 20
medoid: human MGYG000002619
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AAI clade 21
medoid: human MGYG000002428
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AAI clade 22
medoid: 3300027805 13
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AAI clade 23
medoid: chicken MGYG000314833
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AAI clade 24
medoid: wastewater GEMS 3300027794 31
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AAI clade 25
medoid: human MGYG000004406
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AAI clade 26
medoid: pig MGYG000301788
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AAI clade 27
medoid: 3300027834 52
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AAI clade 28
medoid: 3300020389 13
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AAI clade 29
medoid: 3300027835 270
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AAI clade 30
medoid: 3300013004 97
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AAI clade 30-1
medoid: 3300013004 97
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AAI clade 30-1-1
medoid: 3300020378 9
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AAI clade 30-1-2
medoid: wastewater GEMS 3300025611 16
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AAI clade 30-1-3
medoid: 3300027572 20
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AAI clade 30-1-4
medoid: 3300001683 35
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AAI clade 30-1-5
medoid: 3300024339 16
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AAI clade 30-1-6
medoid: 3300027777 44
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AAI clade 30-1-7
medoid: wastewater GEMS 3300025689 63
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AAI clade 30-1-8
medoid: 3300020403 12
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AAI clade 30-1-9
medoid: 3300018426 34
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AAI clade 30-1-10
medoid: 3300006083 2
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AAI clade 30-1-11
medoid: wastewater ye ASMAG1502
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AAI clade 30-1-12
medoid: 3300013004 97
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AAI clade 30-1-13
medoid: 3300026519 25
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AAI clade 30-1-14
medoid: wastewater ye ASMAG1294
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AAI clade 30-1-15
medoid: 3300009084 65
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AAI clade 30-1-16
medoid: 3300009703 39
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AAI clade 30-1-17
medoid: 3300014152 20
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AAI clade 30-1-18
medoid: 3300025648 16
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AAI clade 30-1-19
medoid: wastewater ye ASMAG2007
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AAI clade 30-1-20
medoid: 3300012186 10
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AAI clade 30-1-21
medoid: 3300018040 17
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AAI clade 30-1-22
medoid: wastewater ye ASMAG1564
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AAI clade 30-1-23
medoid: 3300017532 69
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AAI clade 30-1-24
medoid: 3300013285 15
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AAI clade 30-1-25
medoid: wastewater singleton GCA 016702505 1 ASM1670250v1 genomic
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AAI clade 30-1-26
medoid: 3300027055 13
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AAI clade 30-1-27
medoid: 3300017453 27
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AAI clade 30-1-28
medoid: wastewater GEMS 3300025858 34
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AAI clade 30-1-29
medoid: 3300027700 6
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AAI clade 30-1-30
medoid: 3300027897 63
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AAI clade 30-1-31
medoid: 3300027553 9
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AAI clade 30-1-32
medoid: 3300020383 23
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AAI clade 30-1-33
medoid: 3300027700 13
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AAI clade 30-1-34
medoid: 3300027902 36
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AAI clade 30-1-35
medoid: 3300027754 55
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AAI clade 30-1-36
medoid: 3300027835 135
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AAI clade 30-1-37
medoid: wastewater ye ASMAG1592
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AAI clade 30-1-38
medoid: wastewater GEMS 3300026516 52
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AAI clade 30-1-39
medoid: wastewater ye ASMAG2013
7 datasets: wastewater GEMS 3300026516 25 (AAI: 59.6%), wastewater ye ASMAG1172 (AAI: 55.97%), wastewater ye ASMAG1928 (AAI: 59.24%), wastewater ye ASMAG2013 (AAI: 100.0%), wastewater ye ASMAG535 (AAI: 56.06%), wastewater ye ASMAG685 (AAI: 68.95%), and wastewater ye ASMAG933 (AAI: 54.68%)
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AAI clade 30-1-40
medoid: wastewater ye ASMAG1931
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AAI clade 30-1-41
medoid: wastewater ye ASMAG1695
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AAI clade 30-1-1
medoid: 3300020378 9
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AAI clade 30-2
medoid: 3300013126 55
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AAI clade 30-1
medoid: 3300013004 97
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AAI clade 31
medoid: 3300025065 6
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AAI clade 32
medoid: human MGYG000004800
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AAI clade 33
medoid: ruminant GCA 015060255 1
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AAI clade 34
medoid: chicken GCA 019115885 1
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AAI clade 35
medoid: pig SAMEA3663026 metabat2 high PE 017
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AAI clade 36
medoid: human MGYG000000998
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AAI clade 37
medoid: 3300012919 27
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AAI clade 38
medoid: 3300027851 42
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AAI clade 39
medoid: wastewater ye ASMAG566