AAI clade 30-1-12 | MiGA Online

AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

AAI clade 1 medoid: human MGYG000000946
AAI clade 2 medoid: human MGYG000000019
AAI clade 3 medoid: human MGYG000003370
AAI clade 4 medoid: 3300027323 37
AAI clade 5 medoid: human MGYG000004185
AAI clade 6 medoid: human MGYG000001010
AAI clade 7 medoid: wastewater GEMS 3300025861 51
AAI clade 8 medoid: human MGYG000002603
AAI clade 9 medoid: 3300024953 8
AAI clade 10 medoid: 3300017423 5
AAI clade 11 medoid: pig GCA 946405745 1
AAI clade 12 medoid: 3300006192 20
AAI clade 13 medoid: pig LW1 s150947 bin 23
AAI clade 14 medoid: dog Snoopy p1 metabat2 high PE 009
AAI clade 15 medoid: pig MGYG000302081
AAI clade 16 medoid: human MGYG000000545
AAI clade 17 medoid: human MGYG000003895
AAI clade 18 medoid: chicken MGYG000313561
AAI clade 19 medoid: 3300024912 1
AAI clade 20 medoid: human MGYG000002619
AAI clade 21 medoid: human MGYG000002428
AAI clade 22 medoid: 3300027805 13
AAI clade 23 medoid: chicken MGYG000314833
AAI clade 24 medoid: wastewater GEMS 3300027794 31
AAI clade 25 medoid: human MGYG000004406
AAI clade 26 medoid: pig MGYG000301788
AAI clade 27 medoid: 3300027834 52
AAI clade 28 medoid: 3300020389 13
AAI clade 29 medoid: 3300027835 270
AAI clade 30 medoid: 3300013004 97
- AAI clade 30-1 medoid: 3300013004 97
  - AAI clade 30-1-1 medoid: 3300020378 9
  - AAI clade 30-1-2 medoid: wastewater GEMS 3300025611 16
  - AAI clade 30-1-3 medoid: 3300027572 20
  - AAI clade 30-1-4 medoid: 3300001683 35
  - AAI clade 30-1-5 medoid: 3300024339 16
  - AAI clade 30-1-6 medoid: 3300027777 44
  - AAI clade 30-1-7 medoid: wastewater GEMS 3300025689 63
  - AAI clade 30-1-8 medoid: 3300020403 12
  - AAI clade 30-1-9 medoid: 3300018426 34
  - AAI clade 30-1-10 medoid: 3300006083 2
  - AAI clade 30-1-11 medoid: wastewater ye ASMAG1502
  - AAI clade 30-1-12 medoid: 3300013004 97
    
    AAI clade 30-1-12-1 medoid: 3300013004 97
    
    AAI clade 30-1-12-2 medoid: 3300013006 46
    
    AAI clade 30-1-12-3 medoid: 3300014720 34
  - AAI clade 30-1-13 medoid: 3300026519 25
  - AAI clade 30-1-14 medoid: wastewater ye ASMAG1294
  - AAI clade 30-1-15 medoid: 3300009084 65
  - AAI clade 30-1-16 medoid: 3300009703 39
  - AAI clade 30-1-17 medoid: 3300014152 20
  - AAI clade 30-1-18 medoid: 3300025648 16
  - AAI clade 30-1-19 medoid: wastewater ye ASMAG2007
  - AAI clade 30-1-20 medoid: 3300012186 10
  - AAI clade 30-1-21 medoid: 3300018040 17
  - AAI clade 30-1-22 medoid: wastewater ye ASMAG1564
  - AAI clade 30-1-23 medoid: 3300017532 69
  - AAI clade 30-1-24 medoid: 3300013285 15
  - AAI clade 30-1-25 medoid: wastewater singleton GCA 016702505 1 ASM1670250v1 genomic
  - AAI clade 30-1-26 medoid: 3300027055 13
  - AAI clade 30-1-27 medoid: 3300017453 27
  - AAI clade 30-1-28 medoid: wastewater GEMS 3300025858 34
  - AAI clade 30-1-29 medoid: 3300027700 6
  - AAI clade 30-1-30 medoid: 3300027897 63
  - AAI clade 30-1-31 medoid: 3300027553 9
  - AAI clade 30-1-32 medoid: 3300020383 23
  - AAI clade 30-1-33 medoid: 3300027700 13
  - AAI clade 30-1-34 medoid: 3300027902 36
  - AAI clade 30-1-35 medoid: 3300027754 55
  - AAI clade 30-1-36 medoid: 3300027835 135
  - AAI clade 30-1-37 medoid: wastewater ye ASMAG1592
  - AAI clade 30-1-38 medoid: wastewater GEMS 3300026516 52
  - AAI clade 30-1-39 medoid: wastewater ye ASMAG2013
  - AAI clade 30-1-40 medoid: wastewater ye ASMAG1931
  - AAI clade 30-1-41 medoid: wastewater ye ASMAG1695
- AAI clade 30-2 medoid: 3300013126 55
AAI clade 31 medoid: 3300025065 6
AAI clade 32 medoid: human MGYG000004800
AAI clade 33 medoid: ruminant GCA 015060255 1
AAI clade 34 medoid: chicken GCA 019115885 1
AAI clade 35 medoid: pig SAMEA3663026 metabat2 high PE 017
AAI clade 36 medoid: human MGYG000000998
AAI clade 37 medoid: 3300012919 27
AAI clade 38 medoid: 3300027851 42
AAI clade 39 medoid: wastewater ye ASMAG566

AAI-based medoid clustering

A collaboration between