AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: human MGYG000000946
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AAI clade 2
medoid: human MGYG000000019
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AAI clade 3
medoid: human MGYG000003370
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AAI clade 3-1
medoid: chicken GCA 020741225 1
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AAI clade 3-1-1
medoid: cow GCA 002077435 1
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AAI clade 3-1-2
medoid: pig F5612 bin 29
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AAI clade 3-1-3
medoid: cow GCA 002197645 1
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AAI clade 3-1-4
medoid: pig S76602A bin 29
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AAI clade 3-1-5
medoid: chicken GCA 019115705 1
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AAI clade 3-1-6
medoid: chicken GCA 020907825 1
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AAI clade 3-1-7
medoid: human MGYG000001696
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AAI clade 3-1-8
medoid: human MGYG000000163
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AAI clade 3-1-9
medoid: bird X263 White Stork maxbin2 low prob 001
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AAI clade 3-1-10
medoid: bird X90 Water Rail maxbin2 high prob 002
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AAI clade 3-1-11
medoid: bird X90 Water Rail maxbin2 high prob 001
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AAI clade 3-1-12
medoid: chicken GCA 019116785 1
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AAI clade 3-1-13
medoid: cow GCA 005145005 1
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AAI clade 3-1-14
medoid: dog GCA 002269685 1
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AAI clade 3-1-15
medoid: human MGYG000000234
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AAI clade 3-1-16
medoid: pig F4692 bin 42
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AAI clade 3-1-17
medoid: pig F5141 bin 68
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AAI clade 3-1-18
medoid: pig F5490 bin 31
1 dataset: pig F5490 bin 31 (AAI: 100.0%)
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AAI clade 3-1-19
medoid: pig GCA 946409145 1
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AAI clade 3-1-20
medoid: pig GCA 946411785 1
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AAI clade 3-1-1
medoid: cow GCA 002077435 1
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AAI clade 3-2
medoid: pig MGYG000301256
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AAI clade 3-3
medoid: human MGYG000000580
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AAI clade 3-4
medoid: pig MGYG000302300
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AAI clade 3-5
medoid: chicken GCA 019120355 1
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AAI clade 3-6
medoid: chicken MGYG000314949
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AAI clade 3-7
medoid: human MGYG000003138
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AAI clade 3-8
medoid: human MGYG000000011
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AAI clade 3-9
medoid: human MGYG000002357
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AAI clade 3-10
medoid: chicken GCA 014836905 1
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AAI clade 3-11
medoid: human MGYG000002839
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AAI clade 3-12
medoid: human MGYG000000199
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AAI clade 3-1
medoid: chicken GCA 020741225 1
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AAI clade 4
medoid: 3300027323 37
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AAI clade 5
medoid: human MGYG000004185
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AAI clade 6
medoid: human MGYG000001010
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AAI clade 7
medoid: wastewater GEMS 3300025861 51
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AAI clade 8
medoid: human MGYG000002603
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AAI clade 9
medoid: 3300024953 8
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AAI clade 10
medoid: 3300017423 5
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AAI clade 11
medoid: pig GCA 946405745 1
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AAI clade 12
medoid: 3300006192 20
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AAI clade 13
medoid: pig LW1 s150947 bin 23
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AAI clade 14
medoid: dog Snoopy p1 metabat2 high PE 009
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AAI clade 15
medoid: pig MGYG000302081
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AAI clade 16
medoid: human MGYG000000545
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AAI clade 17
medoid: human MGYG000003895
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AAI clade 18
medoid: chicken MGYG000313561
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AAI clade 19
medoid: 3300024912 1
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AAI clade 20
medoid: human MGYG000002619
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AAI clade 21
medoid: human MGYG000002428
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AAI clade 22
medoid: 3300027805 13
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AAI clade 23
medoid: chicken MGYG000314833
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AAI clade 24
medoid: wastewater GEMS 3300027794 31
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AAI clade 25
medoid: human MGYG000004406
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AAI clade 26
medoid: pig MGYG000301788
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AAI clade 27
medoid: 3300027834 52
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AAI clade 28
medoid: 3300020389 13
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AAI clade 29
medoid: 3300027835 270
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AAI clade 30
medoid: 3300013004 97
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AAI clade 31
medoid: 3300025065 6
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AAI clade 32
medoid: human MGYG000004800
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AAI clade 33
medoid: ruminant GCA 015060255 1
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AAI clade 34
medoid: chicken GCA 019115885 1
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AAI clade 35
medoid: pig SAMEA3663026 metabat2 high PE 017
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AAI clade 36
medoid: human MGYG000000998
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AAI clade 37
medoid: 3300012919 27
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AAI clade 38
medoid: 3300027851 42
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AAI clade 39
medoid: wastewater ye ASMAG566