AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: human MGYG000000946
  • AAI clade 2 medoid: human MGYG000000019
  • AAI clade 3 medoid: human MGYG000003370
    • AAI clade 3-1 medoid: chicken GCA 020741225 1
    • AAI clade 3-2 medoid: pig MGYG000301256
    • AAI clade 3-3 medoid: human MGYG000000580
    • AAI clade 3-4 medoid: pig MGYG000302300
    • AAI clade 3-5 medoid: chicken GCA 019120355 1
    • AAI clade 3-6 medoid: chicken MGYG000314949
    • AAI clade 3-7 medoid: human MGYG000003138
    • AAI clade 3-8 medoid: human MGYG000000011
    • AAI clade 3-9 medoid: human MGYG000002357
      • AAI clade 3-9-1 medoid: chicken GCA 001677965 1
      • AAI clade 3-9-2 medoid: human MGYG000000012
      • AAI clade 3-9-3 medoid: dog GCA 018966485 1
      • AAI clade 3-9-4 medoid: human MGYG000002357
      • AAI clade 3-9-5 medoid: 3300021518 18
      • AAI clade 3-9-6 medoid: bird GCA 001675655 1
      • AAI clade 3-9-7 medoid: human MGYG000002404
      • AAI clade 3-9-8 medoid: chicken GCA 014836645 1
      • AAI clade 3-9-9 medoid: chicken GCA 014836955 1
      • AAI clade 3-9-10 medoid: chicken GCA 019113205 1
      • AAI clade 3-9-11 medoid: chicken MGYG000316324
      • AAI clade 3-9-12 medoid: human MGYG000001428
      • AAI clade 3-9-13 medoid: human MGYG000000083
      • AAI clade 3-9-14 medoid: human MGYG000000116
      • AAI clade 3-9-15 medoid: human MGYG000001395
      • AAI clade 3-9-16 medoid: human MGYG000001390
      • AAI clade 3-9-17 medoid: human MGYG000001405
      • AAI clade 3-9-18 medoid: human MGYG000001469
      • AAI clade 3-9-19 medoid: human MGYG000001472
      • AAI clade 3-9-20 medoid: human MGYG000001501
      • AAI clade 3-9-21 medoid: human MGYG000001511
      • AAI clade 3-9-22 medoid: human MGYG000001549
      • AAI clade 3-9-23 medoid: ruminant GCA 008304605 1
      • AAI clade 3-9-24 medoid: human MGYG000002326
      • AAI clade 3-9-25 medoid: human MGYG000003133
      • AAI clade 3-9-26 medoid: ruminant GCA 015059665 1
      • AAI clade 3-9-27 medoid: ruminant X410 Impala metabat2 high PE 006
    • AAI clade 3-10 medoid: chicken GCA 014836905 1
    • AAI clade 3-11 medoid: human MGYG000002839
    • AAI clade 3-12 medoid: human MGYG000000199
  • AAI clade 4 medoid: 3300027323 37
  • AAI clade 5 medoid: human MGYG000004185
  • AAI clade 6 medoid: human MGYG000001010
  • AAI clade 7 medoid: wastewater GEMS 3300025861 51
  • AAI clade 8 medoid: human MGYG000002603
  • AAI clade 9 medoid: 3300024953 8
  • AAI clade 10 medoid: 3300017423 5
  • AAI clade 11 medoid: pig GCA 946405745 1
  • AAI clade 12 medoid: 3300006192 20
  • AAI clade 13 medoid: pig LW1 s150947 bin 23
  • AAI clade 14 medoid: dog Snoopy p1 metabat2 high PE 009
  • AAI clade 15 medoid: pig MGYG000302081
  • AAI clade 16 medoid: human MGYG000000545
  • AAI clade 17 medoid: human MGYG000003895
  • AAI clade 18 medoid: chicken MGYG000313561
  • AAI clade 19 medoid: 3300024912 1
  • AAI clade 20 medoid: human MGYG000002619
  • AAI clade 21 medoid: human MGYG000002428
  • AAI clade 22 medoid: 3300027805 13
  • AAI clade 23 medoid: chicken MGYG000314833
  • AAI clade 24 medoid: wastewater GEMS 3300027794 31
  • AAI clade 25 medoid: human MGYG000004406
  • AAI clade 26 medoid: pig MGYG000301788
  • AAI clade 27 medoid: 3300027834 52
  • AAI clade 28 medoid: 3300020389 13
  • AAI clade 29 medoid: 3300027835 270
  • AAI clade 30 medoid: 3300013004 97
  • AAI clade 31 medoid: 3300025065 6
  • AAI clade 32 medoid: human MGYG000004800
  • AAI clade 33 medoid: ruminant GCA 015060255 1
  • AAI clade 34 medoid: chicken GCA 019115885 1
  • AAI clade 35 medoid: pig SAMEA3663026 metabat2 high PE 017
  • AAI clade 36 medoid: human MGYG000000998
  • AAI clade 37 medoid: 3300012919 27
  • AAI clade 38 medoid: 3300027851 42
  • AAI clade 39 medoid: wastewater ye ASMAG566