AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
-
AAI clade 1
medoid: human MGYG000000946
-
AAI clade 2
medoid: human MGYG000000019
-
AAI clade 3
medoid: human MGYG000003370
-
AAI clade 4
medoid: 3300027323 37
-
AAI clade 5
medoid: human MGYG000004185
-
AAI clade 6
medoid: human MGYG000001010
-
AAI clade 7
medoid: wastewater GEMS 3300025861 51
-
AAI clade 8
medoid: human MGYG000002603
-
AAI clade 9
medoid: 3300024953 8
-
AAI clade 10
medoid: 3300017423 5
-
AAI clade 11
medoid: pig GCA 946405745 1
-
AAI clade 12
medoid: 3300006192 20
-
AAI clade 13
medoid: pig LW1 s150947 bin 23
-
AAI clade 14
medoid: dog Snoopy p1 metabat2 high PE 009
-
AAI clade 15
medoid: pig MGYG000302081
-
AAI clade 16
medoid: human MGYG000000545
-
AAI clade 17
medoid: human MGYG000003895
-
AAI clade 18
medoid: chicken MGYG000313561
-
AAI clade 19
medoid: 3300024912 1
-
AAI clade 20
medoid: human MGYG000002619
-
AAI clade 21
medoid: human MGYG000002428
-
AAI clade 22
medoid: 3300027805 13
-
AAI clade 23
medoid: chicken MGYG000314833
-
AAI clade 24
medoid: wastewater GEMS 3300027794 31
-
AAI clade 25
medoid: human MGYG000004406
-
AAI clade 25-1
medoid: human MGYG000004406
-
AAI clade 25-2
medoid: human MGYG000003940
-
AAI clade 25-3
medoid: human MGYG000002814
-
AAI clade 25-4
medoid: human MGYG000001840
-
AAI clade 25-5
medoid: chicken MGYG000320396
-
AAI clade 25-6
medoid: human MGYG000000434
-
AAI clade 25-7
medoid: human MGYG000000465
-
AAI clade 25-7-1
medoid: chicken MGYG000309937
-
AAI clade 25-7-2
medoid: human MGYG000000465
-
AAI clade 25-7-3
medoid: human MGYG000004352
-
AAI clade 25-7-4
medoid: chicken MGYG000320516
5 datasets: chicken GCA 018711775 1 (AAI: 89.81%), chicken MGYG000309789 (AAI: 74.16%), chicken MGYG000317521 (AAI: 70.81%), chicken MGYG000318319 (AAI: 66.12%), and chicken MGYG000320516 (AAI: 100.0%)
-
AAI clade 25-7-5
medoid: pig F4984 bin 1
-
AAI clade 25-7-6
medoid: pig F5268 bin 4
-
AAI clade 25-7-7
medoid: pig MGYG000301827
-
AAI clade 25-7-8
medoid: ruminant GCA 015059375 1
-
AAI clade 25-7-1
medoid: chicken MGYG000309937
-
AAI clade 25-8
medoid: human MGYG000004218
-
AAI clade 25-9
medoid: pig W4950 bin 8
-
AAI clade 25-10
medoid: chicken MGYG000315964
-
AAI clade 25-11
medoid: human MGYG000004102
-
AAI clade 25-12
medoid: pig MGYG000302538
-
AAI clade 25-13
medoid: human MGYG000002799
-
AAI clade 25-14
medoid: chicken MGYG000310138
-
AAI clade 25-15
medoid: human MGYG000002239
-
AAI clade 25-1
medoid: human MGYG000004406
-
AAI clade 26
medoid: pig MGYG000301788
-
AAI clade 27
medoid: 3300027834 52
-
AAI clade 28
medoid: 3300020389 13
-
AAI clade 29
medoid: 3300027835 270
-
AAI clade 30
medoid: 3300013004 97
-
AAI clade 31
medoid: 3300025065 6
-
AAI clade 32
medoid: human MGYG000004800
-
AAI clade 33
medoid: ruminant GCA 015060255 1
-
AAI clade 34
medoid: chicken GCA 019115885 1
-
AAI clade 35
medoid: pig SAMEA3663026 metabat2 high PE 017
-
AAI clade 36
medoid: human MGYG000000998
-
AAI clade 37
medoid: 3300012919 27
-
AAI clade 38
medoid: 3300027851 42
-
AAI clade 39
medoid: wastewater ye ASMAG566