AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: human MGYG000000946
  • AAI clade 2 medoid: human MGYG000000019
  • AAI clade 3 medoid: human MGYG000003370
  • AAI clade 4 medoid: 3300027323 37
  • AAI clade 5 medoid: human MGYG000004185
  • AAI clade 6 medoid: human MGYG000001010
  • AAI clade 7 medoid: wastewater GEMS 3300025861 51
  • AAI clade 8 medoid: human MGYG000002603
  • AAI clade 9 medoid: 3300024953 8
  • AAI clade 10 medoid: 3300017423 5
  • AAI clade 11 medoid: pig GCA 946405745 1
  • AAI clade 12 medoid: 3300006192 20
  • AAI clade 13 medoid: pig LW1 s150947 bin 23
  • AAI clade 14 medoid: dog Snoopy p1 metabat2 high PE 009
  • AAI clade 15 medoid: pig MGYG000302081
  • AAI clade 16 medoid: human MGYG000000545
  • AAI clade 17 medoid: human MGYG000003895
  • AAI clade 18 medoid: chicken MGYG000313561
  • AAI clade 19 medoid: 3300024912 1
  • AAI clade 20 medoid: human MGYG000002619
  • AAI clade 21 medoid: human MGYG000002428
  • AAI clade 22 medoid: 3300027805 13
  • AAI clade 23 medoid: chicken MGYG000314833
  • AAI clade 24 medoid: wastewater GEMS 3300027794 31
  • AAI clade 25 medoid: human MGYG000004406
    • AAI clade 25-1 medoid: human MGYG000004406
      • AAI clade 25-1-1 medoid: human MGYG000003090
      • AAI clade 25-1-2 medoid: chicken GCA 018716115 1
      • AAI clade 25-1-3 medoid: human MGYG000004406
      • AAI clade 25-1-4 medoid: human MGYG000000419
      • AAI clade 25-1-5 medoid: human MGYG000004391
      • AAI clade 25-1-6 medoid: pig S95006B bin 32
      • AAI clade 25-1-7 medoid: human MGYG000004038
      • AAI clade 25-1-8 medoid: human MGYG000004299
      • AAI clade 25-1-9 medoid: human MGYG000003981
      • AAI clade 25-1-10 medoid: human MGYG000004527
      • AAI clade 25-1-11 medoid: 3300000227 53
      • AAI clade 25-1-12 medoid: 3300014656 33
      • AAI clade 25-1-13 medoid: 3300017526 65
      • AAI clade 25-1-14 medoid: 3300027800 82
      • AAI clade 25-1-15 medoid: chicken MGYG000320339
      • AAI clade 25-1-16 medoid: chicken MGYG000310995
      • AAI clade 25-1-17 medoid: chicken MGYG000314507
      • AAI clade 25-1-18 medoid: chicken MGYG000315008
      • AAI clade 25-1-19 medoid: chicken MGYG000317592
      • AAI clade 25-1-20 medoid: human MGYG000000498
      • AAI clade 25-1-21 medoid: human MGYG000000784
      • AAI clade 25-1-22 medoid: human MGYG000001672
      • AAI clade 25-1-23 medoid: human MGYG000002139
      • AAI clade 25-1-24 medoid: human MGYG000004303
      • AAI clade 25-1-25 medoid: human MGYG000004741
      • AAI clade 25-1-26 medoid: pig F4596 bin 60
      • AAI clade 25-1-27 medoid: pig F4666 bin 55
      • AAI clade 25-1-28 medoid: pig F4726 bin 73
      • AAI clade 25-1-29 medoid: pig F5094 bin 42
      • AAI clade 25-1-30 medoid: pig F5235 bin 41
      • AAI clade 25-1-31 medoid: pig F5509 bin 28
      • AAI clade 25-1-32 medoid: pig MGYG000299723
      • AAI clade 25-1-33 medoid: ruminant GCA 015059295 1
      • AAI clade 25-1-34 medoid: ruminant GCA 015059405 1
      • AAI clade 25-1-35 medoid: wastewater GEMS 3300025730 80
    • AAI clade 25-2 medoid: human MGYG000003940
    • AAI clade 25-3 medoid: human MGYG000002814
    • AAI clade 25-4 medoid: human MGYG000001840
    • AAI clade 25-5 medoid: chicken MGYG000320396
    • AAI clade 25-6 medoid: human MGYG000000434
    • AAI clade 25-7 medoid: human MGYG000000465
    • AAI clade 25-8 medoid: human MGYG000004218
    • AAI clade 25-9 medoid: pig W4950 bin 8
    • AAI clade 25-10 medoid: chicken MGYG000315964
    • AAI clade 25-11 medoid: human MGYG000004102
    • AAI clade 25-12 medoid: pig MGYG000302538
    • AAI clade 25-13 medoid: human MGYG000002799
    • AAI clade 25-14 medoid: chicken MGYG000310138
    • AAI clade 25-15 medoid: human MGYG000002239
  • AAI clade 26 medoid: pig MGYG000301788
  • AAI clade 27 medoid: 3300027834 52
  • AAI clade 28 medoid: 3300020389 13
  • AAI clade 29 medoid: 3300027835 270
  • AAI clade 30 medoid: 3300013004 97
  • AAI clade 31 medoid: 3300025065 6
  • AAI clade 32 medoid: human MGYG000004800
  • AAI clade 33 medoid: ruminant GCA 015060255 1
  • AAI clade 34 medoid: chicken GCA 019115885 1
  • AAI clade 35 medoid: pig SAMEA3663026 metabat2 high PE 017
  • AAI clade 36 medoid: human MGYG000000998
  • AAI clade 37 medoid: 3300012919 27
  • AAI clade 38 medoid: 3300027851 42
  • AAI clade 39 medoid: wastewater ye ASMAG566