AAI clade 24-3-1-1-4 | MiGA Online

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AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

AAI clade 1 medoid: human MGYG000000946
AAI clade 2 medoid: human MGYG000000019
AAI clade 3 medoid: human MGYG000003370
AAI clade 4 medoid: 3300027323 37
AAI clade 5 medoid: human MGYG000004185
AAI clade 6 medoid: human MGYG000001010
AAI clade 7 medoid: wastewater GEMS 3300025861 51
AAI clade 8 medoid: human MGYG000002603
AAI clade 9 medoid: 3300024953 8
AAI clade 10 medoid: 3300017423 5
AAI clade 11 medoid: pig GCA 946405745 1
AAI clade 12 medoid: 3300006192 20
AAI clade 13 medoid: pig LW1 s150947 bin 23
AAI clade 14 medoid: dog Snoopy p1 metabat2 high PE 009
AAI clade 15 medoid: pig MGYG000302081
AAI clade 16 medoid: human MGYG000000545
AAI clade 17 medoid: human MGYG000003895
AAI clade 18 medoid: chicken MGYG000313561
AAI clade 19 medoid: 3300024912 1
AAI clade 20 medoid: human MGYG000002619
AAI clade 21 medoid: human MGYG000002428
AAI clade 22 medoid: 3300027805 13
AAI clade 23 medoid: chicken MGYG000314833
AAI clade 24 medoid: wastewater GEMS 3300027794 31
- AAI clade 24-1 medoid: pig F5115 bin 23
- AAI clade 24-2 medoid: 3300025532 7
- AAI clade 24-3 medoid: 3300027851 28
  - AAI clade 24-3-1 medoid: 3300027851 28
    
    AAI clade 24-3-1-1 medoid: 3300027851 28
    
    AAI clade 24-3-1-1-1 medoid: 3300015360 79
    
    AAI clade 24-3-1-1-2 medoid: 3300020477 33
    
    AAI clade 24-3-1-1-3 medoid: 3300000504 1
    
    AAI clade 24-3-1-1-4 medoid: 3300004097 36
    
    1 dataset: 3300004097 36 (AAI: 100.0%)
    
    AAI clade 24-3-1-1-5 medoid: 3300009702 79
    
    AAI clade 24-3-1-1-6 medoid: 3300010368 17
    
    AAI clade 24-3-1-1-7 medoid: 3300013004 120
    
    AAI clade 24-3-1-1-8 medoid: 3300027796 7
    
    AAI clade 24-3-1-1-9 medoid: 3300013131 103
    
    AAI clade 24-3-1-1-10 medoid: 3300027851 28
    
    AAI clade 24-3-1-1-11 medoid: 3300013131 86
    
    AAI clade 24-3-1-1-12 medoid: 3300013132 140
    
    AAI clade 24-3-1-1-13 medoid: 3300014720 44
    
    AAI clade 24-3-1-1-14 medoid: 3300017518 60
    
    AAI clade 24-3-1-1-15 medoid: 3300018428 32
    
    AAI clade 24-3-1-1-16 medoid: 3300020109 72
    
    AAI clade 24-3-1-1-17 medoid: 3300020182 15
    
    AAI clade 24-3-1-1-18 medoid: 3300020184 42
    
    AAI clade 24-3-1-1-19 medoid: 3300020364 24
    
    AAI clade 24-3-1-1-20 medoid: 3300020373 18
    
    AAI clade 24-3-1-1-21 medoid: 3300020380 8
    
    AAI clade 24-3-1-1-22 medoid: 3300025286 5
    
    AAI clade 24-3-1-1-23 medoid: 3300020415 48
    
    AAI clade 24-3-1-1-24 medoid: 3300020429 10
    
    AAI clade 24-3-1-1-25 medoid: 3300020430 21
    
    AAI clade 24-3-1-1-26 medoid: wastewater GEMS 3300001605 44
    
    AAI clade 24-3-1-1-27 medoid: 3300020478 28
    
    AAI clade 24-3-1-1-28 medoid: 3300020578 83
    
    AAI clade 24-3-1-1-29 medoid: 3300020596 24
    
    AAI clade 24-3-1-1-30 medoid: 3300021341 25
    
    AAI clade 24-3-1-1-31 medoid: wastewater GEMS 3300027673 31
    
    AAI clade 24-3-1-1-32 medoid: 3300023174 68
    
    AAI clade 24-3-1-1-33 medoid: 3300027980 22
    
    AAI clade 24-3-1-1-34 medoid: 3300025378 4
    
    AAI clade 24-3-1-1-35 medoid: 3300027848 106
    
    AAI clade 24-3-1-1-36 medoid: 3300025614 22
    
    AAI clade 24-3-1-1-37 medoid: 3300025838 21
    
    AAI clade 24-3-1-1-38 medoid: 3300025886 31
    
    AAI clade 24-3-1-1-39 medoid: 3300027285 14
    
    AAI clade 24-3-1-1-40 medoid: 3300027607 24
    
    AAI clade 24-3-1-1-41 medoid: 3300027839 20
    
    AAI clade 24-3-1-1-42 medoid: 3300027688 5
    
    AAI clade 24-3-1-1-43 medoid: 3300027733 40
    
    AAI clade 24-3-1-1-44 medoid: 3300027754 37
    
    AAI clade 24-3-1-1-45 medoid: 3300027777 78
    
    AAI clade 24-3-1-1-46 medoid: 3300027797 51
    
    AAI clade 24-3-1-1-47 medoid: 3300027806 46
    
    AAI clade 24-3-1-1-48 medoid: 3300027815 19
    
    AAI clade 24-3-1-1-49 medoid: 3300027820 10
    
    AAI clade 24-3-1-1-50 medoid: 3300027822 56
    
    AAI clade 24-3-1-1-51 medoid: 3300027851 54
    
    AAI clade 24-3-1-1-52 medoid: 3300028114 29
    
    AAI clade 24-3-1-1-53 medoid: 3300028553 51
    
    AAI clade 24-3-1-1-54 medoid: ruminant GCA 015062335 1
    
    AAI clade 24-3-1-1-55 medoid: wastewater GEMS 3300001605 34
    
    AAI clade 24-3-1-1-56 medoid: wastewater GEMS 3300006056 120
    
    AAI clade 24-3-1-1-57 medoid: wastewater GEMS 3300006056 90
    
    AAI clade 24-3-1-1-58 medoid: wastewater GEMS 3300014832 13
    
    AAI clade 24-3-1-1-59 medoid: wastewater GEMS 3300023201 10
    
    AAI clade 24-3-1-1-60 medoid: wastewater GEMS 3300026516 59
    
    AAI clade 24-3-1-1-61 medoid: wastewater ye ASMAG1422
    
    AAI clade 24-3-1-1-62 medoid: wastewater singleton GCA 016722515 1 ASM1672251v1 genomic
    
    AAI clade 24-3-1-1-63 medoid: wastewater ye ASMAG1036
    
    AAI clade 24-3-1-1-64 medoid: wastewater ye ASMAG123
    
    AAI clade 24-3-1-1-65 medoid: wastewater ye ASMAG1268
    
    AAI clade 24-3-1-1-66 medoid: wastewater ye ASMAG1379
    
    AAI clade 24-3-1-1-67 medoid: wastewater ye ASMAG1754
    
    AAI clade 24-3-1-1-68 medoid: wastewater ye ASMAG634
    
    AAI clade 24-3-1-1-69 medoid: wastewater ye ASMAG965
    
    AAI clade 24-3-1-2 medoid: 3300024504 1
    
    AAI clade 24-3-1-3 medoid: wastewater GEMS 3300028625 20
  - AAI clade 24-3-2 medoid: 3300003894 18
  - AAI clade 24-3-3 medoid: wastewater ye ASMAG423
- AAI clade 24-4 medoid: wastewater GEMS 3300027794 31
- AAI clade 24-5 medoid: ruminant GCA 015062495 1
- AAI clade 24-6 medoid: human MGYG000004521
- AAI clade 24-7 medoid: 3300025701 13
- AAI clade 24-8 medoid: 3300025093 16
- AAI clade 24-9 medoid: 3300025079 6
- AAI clade 24-10 medoid: 3300020595 20
- AAI clade 24-11 medoid: 3300022752 22
- AAI clade 24-12 medoid: wastewater ye ASMAG1257
- AAI clade 24-13 medoid: 3300025690 33
AAI clade 25 medoid: human MGYG000004406
AAI clade 26 medoid: pig MGYG000301788
AAI clade 27 medoid: 3300027834 52
AAI clade 28 medoid: 3300020389 13
AAI clade 29 medoid: 3300027835 270
AAI clade 30 medoid: 3300013004 97
AAI clade 31 medoid: 3300025065 6
AAI clade 32 medoid: human MGYG000004800
AAI clade 33 medoid: ruminant GCA 015060255 1
AAI clade 34 medoid: chicken GCA 019115885 1
AAI clade 35 medoid: pig SAMEA3663026 metabat2 high PE 017
AAI clade 36 medoid: human MGYG000000998
AAI clade 37 medoid: 3300012919 27
AAI clade 38 medoid: 3300027851 42
AAI clade 39 medoid: wastewater ye ASMAG566

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