AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: human MGYG000000946
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AAI clade 2
medoid: human MGYG000000019
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AAI clade 3
medoid: human MGYG000003370
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AAI clade 4
medoid: 3300027323 37
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AAI clade 5
medoid: human MGYG000004185
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AAI clade 6
medoid: human MGYG000001010
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AAI clade 7
medoid: wastewater GEMS 3300025861 51
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AAI clade 8
medoid: human MGYG000002603
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AAI clade 9
medoid: 3300024953 8
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AAI clade 10
medoid: 3300017423 5
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AAI clade 11
medoid: pig GCA 946405745 1
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AAI clade 12
medoid: 3300006192 20
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AAI clade 13
medoid: pig LW1 s150947 bin 23
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AAI clade 14
medoid: dog Snoopy p1 metabat2 high PE 009
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AAI clade 15
medoid: pig MGYG000302081
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AAI clade 16
medoid: human MGYG000000545
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AAI clade 17
medoid: human MGYG000003895
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AAI clade 18
medoid: chicken MGYG000313561
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AAI clade 19
medoid: 3300024912 1
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AAI clade 20
medoid: human MGYG000002619
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AAI clade 21
medoid: human MGYG000002428
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AAI clade 22
medoid: 3300027805 13
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AAI clade 23
medoid: chicken MGYG000314833
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AAI clade 24
medoid: wastewater GEMS 3300027794 31
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AAI clade 24-1
medoid: pig F5115 bin 23
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AAI clade 24-2
medoid: 3300025532 7
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AAI clade 24-3
medoid: 3300027851 28
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AAI clade 24-3-1
medoid: 3300027851 28
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AAI clade 24-3-1-1
medoid: 3300027851 28
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AAI clade 24-3-1-1-1
medoid: 3300015360 79
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AAI clade 24-3-1-1-2
medoid: 3300020477 33
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AAI clade 24-3-1-1-3
medoid: 3300000504 1
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AAI clade 24-3-1-1-4
medoid: 3300004097 36
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AAI clade 24-3-1-1-5
medoid: 3300009702 79
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AAI clade 24-3-1-1-6
medoid: 3300010368 17
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AAI clade 24-3-1-1-7
medoid: 3300013004 120
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AAI clade 24-3-1-1-8
medoid: 3300027796 7
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AAI clade 24-3-1-1-9
medoid: 3300013131 103
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AAI clade 24-3-1-1-10
medoid: 3300027851 28
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AAI clade 24-3-1-1-11
medoid: 3300013131 86
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AAI clade 24-3-1-1-12
medoid: 3300013132 140
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AAI clade 24-3-1-1-13
medoid: 3300014720 44
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AAI clade 24-3-1-1-14
medoid: 3300017518 60
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AAI clade 24-3-1-1-15
medoid: 3300018428 32
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AAI clade 24-3-1-1-16
medoid: 3300020109 72
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AAI clade 24-3-1-1-17
medoid: 3300020182 15
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AAI clade 24-3-1-1-18
medoid: 3300020184 42
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AAI clade 24-3-1-1-19
medoid: 3300020364 24
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AAI clade 24-3-1-1-20
medoid: 3300020373 18
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AAI clade 24-3-1-1-21
medoid: 3300020380 8
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AAI clade 24-3-1-1-22
medoid: 3300025286 5
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AAI clade 24-3-1-1-23
medoid: 3300020415 48
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AAI clade 24-3-1-1-24
medoid: 3300020429 10
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AAI clade 24-3-1-1-25
medoid: 3300020430 21
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AAI clade 24-3-1-1-26
medoid: wastewater GEMS 3300001605 44
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AAI clade 24-3-1-1-27
medoid: 3300020478 28
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AAI clade 24-3-1-1-28
medoid: 3300020578 83
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AAI clade 24-3-1-1-29
medoid: 3300020596 24
1 dataset: 3300020596 24 (AAI: 100.0%)
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AAI clade 24-3-1-1-30
medoid: 3300021341 25
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AAI clade 24-3-1-1-31
medoid: wastewater GEMS 3300027673 31
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AAI clade 24-3-1-1-32
medoid: 3300023174 68
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AAI clade 24-3-1-1-33
medoid: 3300027980 22
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AAI clade 24-3-1-1-34
medoid: 3300025378 4
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AAI clade 24-3-1-1-35
medoid: 3300027848 106
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AAI clade 24-3-1-1-36
medoid: 3300025614 22
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AAI clade 24-3-1-1-37
medoid: 3300025838 21
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AAI clade 24-3-1-1-38
medoid: 3300025886 31
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AAI clade 24-3-1-1-39
medoid: 3300027285 14
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AAI clade 24-3-1-1-40
medoid: 3300027607 24
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AAI clade 24-3-1-1-41
medoid: 3300027839 20
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AAI clade 24-3-1-1-42
medoid: 3300027688 5
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AAI clade 24-3-1-1-43
medoid: 3300027733 40
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AAI clade 24-3-1-1-44
medoid: 3300027754 37
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AAI clade 24-3-1-1-45
medoid: 3300027777 78
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AAI clade 24-3-1-1-46
medoid: 3300027797 51
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AAI clade 24-3-1-1-47
medoid: 3300027806 46
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AAI clade 24-3-1-1-48
medoid: 3300027815 19
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AAI clade 24-3-1-1-49
medoid: 3300027820 10
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AAI clade 24-3-1-1-50
medoid: 3300027822 56
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AAI clade 24-3-1-1-51
medoid: 3300027851 54
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AAI clade 24-3-1-1-52
medoid: 3300028114 29
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AAI clade 24-3-1-1-53
medoid: 3300028553 51
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AAI clade 24-3-1-1-54
medoid: ruminant GCA 015062335 1
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AAI clade 24-3-1-1-55
medoid: wastewater GEMS 3300001605 34
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AAI clade 24-3-1-1-56
medoid: wastewater GEMS 3300006056 120
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AAI clade 24-3-1-1-57
medoid: wastewater GEMS 3300006056 90
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AAI clade 24-3-1-1-58
medoid: wastewater GEMS 3300014832 13
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AAI clade 24-3-1-1-59
medoid: wastewater GEMS 3300023201 10
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AAI clade 24-3-1-1-60
medoid: wastewater GEMS 3300026516 59
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AAI clade 24-3-1-1-61
medoid: wastewater ye ASMAG1422
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AAI clade 24-3-1-1-62
medoid: wastewater singleton GCA 016722515 1 ASM1672251v1 genomic
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AAI clade 24-3-1-1-63
medoid: wastewater ye ASMAG1036
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AAI clade 24-3-1-1-64
medoid: wastewater ye ASMAG123
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AAI clade 24-3-1-1-65
medoid: wastewater ye ASMAG1268
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AAI clade 24-3-1-1-66
medoid: wastewater ye ASMAG1379
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AAI clade 24-3-1-1-67
medoid: wastewater ye ASMAG1754
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AAI clade 24-3-1-1-68
medoid: wastewater ye ASMAG634
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AAI clade 24-3-1-1-69
medoid: wastewater ye ASMAG965
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AAI clade 24-3-1-1-1
medoid: 3300015360 79
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AAI clade 24-3-1-2
medoid: 3300024504 1
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AAI clade 24-3-1-3
medoid: wastewater GEMS 3300028625 20
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AAI clade 24-3-1-1
medoid: 3300027851 28
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AAI clade 24-3-2
medoid: 3300003894 18
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AAI clade 24-3-3
medoid: wastewater ye ASMAG423
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AAI clade 24-3-1
medoid: 3300027851 28
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AAI clade 24-4
medoid: wastewater GEMS 3300027794 31
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AAI clade 24-5
medoid: ruminant GCA 015062495 1
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AAI clade 24-6
medoid: human MGYG000004521
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AAI clade 24-7
medoid: 3300025701 13
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AAI clade 24-8
medoid: 3300025093 16
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AAI clade 24-9
medoid: 3300025079 6
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AAI clade 24-10
medoid: 3300020595 20
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AAI clade 24-11
medoid: 3300022752 22
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AAI clade 24-12
medoid: wastewater ye ASMAG1257
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AAI clade 24-13
medoid: 3300025690 33
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AAI clade 24-1
medoid: pig F5115 bin 23
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AAI clade 25
medoid: human MGYG000004406
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AAI clade 26
medoid: pig MGYG000301788
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AAI clade 27
medoid: 3300027834 52
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AAI clade 28
medoid: 3300020389 13
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AAI clade 29
medoid: 3300027835 270
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AAI clade 30
medoid: 3300013004 97
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AAI clade 31
medoid: 3300025065 6
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AAI clade 32
medoid: human MGYG000004800
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AAI clade 33
medoid: ruminant GCA 015060255 1
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AAI clade 34
medoid: chicken GCA 019115885 1
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AAI clade 35
medoid: pig SAMEA3663026 metabat2 high PE 017
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AAI clade 36
medoid: human MGYG000000998
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AAI clade 37
medoid: 3300012919 27
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AAI clade 38
medoid: 3300027851 42
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AAI clade 39
medoid: wastewater ye ASMAG566