AAI clade 17-1-60 | MiGA Online

AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

AAI clade 1 medoid: human MGYG000000946
AAI clade 2 medoid: human MGYG000000019
AAI clade 3 medoid: human MGYG000003370
AAI clade 4 medoid: 3300027323 37
AAI clade 5 medoid: human MGYG000004185
AAI clade 6 medoid: human MGYG000001010
AAI clade 7 medoid: wastewater GEMS 3300025861 51
AAI clade 8 medoid: human MGYG000002603
AAI clade 9 medoid: 3300024953 8
AAI clade 10 medoid: 3300017423 5
AAI clade 11 medoid: pig GCA 946405745 1
AAI clade 12 medoid: 3300006192 20
AAI clade 13 medoid: pig LW1 s150947 bin 23
AAI clade 14 medoid: dog Snoopy p1 metabat2 high PE 009
AAI clade 15 medoid: pig MGYG000302081
AAI clade 16 medoid: human MGYG000000545
AAI clade 17 medoid: human MGYG000003895
- AAI clade 17-1 medoid: human MGYG000003895
  - AAI clade 17-1-1 medoid: human MGYG000001673
  - AAI clade 17-1-2 medoid: human MGYG000003895
  - AAI clade 17-1-3 medoid: chicken GCA 018712465 1
  - AAI clade 17-1-4 medoid: pig F5457 bin 30
  - AAI clade 17-1-5 medoid: chicken GCA 018714125 1
  - AAI clade 17-1-6 medoid: human MGYG000002147
  - AAI clade 17-1-7 medoid: chicken MGYG000310733
  - AAI clade 17-1-8 medoid: pig F5235 bin 65
  - AAI clade 17-1-9 medoid: human MGYG000002684
  - AAI clade 17-1-10 medoid: human MGYG000003876
  - AAI clade 17-1-11 medoid: human MGYG000004145
  - AAI clade 17-1-12 medoid: chicken MGYG000318493
  - AAI clade 17-1-13 medoid: ruminant GCA 015067145 1
  - AAI clade 17-1-14 medoid: human MGYG000000689
  - AAI clade 17-1-15 medoid: human MGYG000000718
  - AAI clade 17-1-16 medoid: human MGYG000004131
  - AAI clade 17-1-17 medoid: pig MGYG000301560
  - AAI clade 17-1-18 medoid: ruminant X409 Impala metabat2 high PE 002
  - AAI clade 17-1-19 medoid: pig QHF6 unmapped bin 41
  - AAI clade 17-1-20 medoid: septage norm maxbin 014
  - AAI clade 17-1-21 medoid: 3300027856 27
  - AAI clade 17-1-22 medoid: wastewater GEMS 3300025605 10
  - AAI clade 17-1-23 medoid: 3300028602 37
  - AAI clade 17-1-24 medoid: 3300002098 3
  - AAI clade 17-1-25 medoid: 3300013130 46
  - AAI clade 17-1-26 medoid: 3300024433 33
  - AAI clade 17-1-27 medoid: 3300026512 30
  - AAI clade 17-1-28 medoid: 3300028398 35
  - AAI clade 17-1-29 medoid: 3300011013 29
  - AAI clade 17-1-30 medoid: 3300012952 41
  - AAI clade 17-1-31 medoid: 3300013123 101
  - AAI clade 17-1-32 medoid: 3300014208 81
  - AAI clade 17-1-33 medoid: wastewater ye ASMAG1955
  - AAI clade 17-1-34 medoid: 3300013130 142
  - AAI clade 17-1-35 medoid: 3300028175 21
  - AAI clade 17-1-36 medoid: 3300024333 11
  - AAI clade 17-1-37 medoid: 3300013137 183
  - AAI clade 17-1-38 medoid: 3300013138 83
  - AAI clade 17-1-39 medoid: 3300029821 8
  - AAI clade 17-1-40 medoid: 3300027819 118
  - AAI clade 17-1-41 medoid: 3300027851 61
  - AAI clade 17-1-42 medoid: wastewater ye ASMAG1116
  - AAI clade 17-1-43 medoid: 3300022752 27
  - AAI clade 17-1-44 medoid: wastewater singleton GCA 016699655 1 ASM1669965v1 genomic
  - AAI clade 17-1-45 medoid: 3300028581 58
  - AAI clade 17-1-46 medoid: 3300027972 7
  - AAI clade 17-1-47 medoid: 3300027917 119
  - AAI clade 17-1-48 medoid: wastewater ye ASMAG559
  - AAI clade 17-1-49 medoid: wastewater GEMS 3300025737 28
  - AAI clade 17-1-50 medoid: 3300027835 107
  - AAI clade 17-1-51 medoid: wastewater ye ASMAG567
  - AAI clade 17-1-52 medoid: wastewater GEMS 3300028635 23
  - AAI clade 17-1-53 medoid: 3300027899 14
  - AAI clade 17-1-54 medoid: chicken GCA 019118385 1
  - AAI clade 17-1-55 medoid: chicken GCA 020809965 1
  - AAI clade 17-1-56 medoid: human MGYG000001597
  - AAI clade 17-1-57 medoid: human MGYG000000663
  - AAI clade 17-1-58 medoid: pig F5284 bin 6
  - AAI clade 17-1-59 medoid: pig MGYG000299837
  - AAI clade 17-1-60 medoid: pig QHF6 unmapped bin 119
    
    8 datasets: human MGYG000004104 (AAI: 53.13%), pig BL unmapped bin 12 (AAI: 58.01%), pig BL unmapped bin 234 (AAI: 49.16%), pig BL unmapped bin 236 (AAI: 58.32%), pig QHF6 unmapped bin 119 (AAI: 100.0%), pig QHF6 unmapped bin 175 (AAI: 66.32%), pig QHF6 unmapped bin 351 (AAI: 53.98%), and pig QHF6 unmapped bin 542 (AAI: 55.08%)
  - AAI clade 17-1-61 medoid: ruminant GCA 015067265 1
  - AAI clade 17-1-62 medoid: pig S50506B bin 16
  - AAI clade 17-1-63 medoid: wastewater GEMS 3300001594 41
  - AAI clade 17-1-64 medoid: wastewater GEMS 3300009769 47
  - AAI clade 17-1-65 medoid: wastewater GEMS 3300009772 16
  - AAI clade 17-1-66 medoid: wastewater GEMS 3300025847 43
  - AAI clade 17-1-67 medoid: wastewater GEMS 3300025691 14
- AAI clade 17-2 medoid: human MGYG000000392
- AAI clade 17-3 medoid: human MGYG000000646
- AAI clade 17-4 medoid: chicken MGYG000313438
- AAI clade 17-5 medoid: human MGYG000004472
- AAI clade 17-6 medoid: human MGYG000001984
- AAI clade 17-7 medoid: pig MGYG000300534
- AAI clade 17-8 medoid: pig F5018 bin 47
- AAI clade 17-9 medoid: chicken GCA 018710915 1
- AAI clade 17-10 medoid: human MGYG000004807
- AAI clade 17-11 medoid: human MGYG000003428
- AAI clade 17-12 medoid: human MGYG000004779
- AAI clade 17-13 medoid: ruminant GCA 015063485 1
- AAI clade 17-14 medoid: pig Duroc SH FCR LM3 bin 14
- AAI clade 17-15 medoid: pig MGYG000302171
- AAI clade 17-16 medoid: pig Boar s14 bin 37
- AAI clade 17-17 medoid: wastewater GEMS 3300028568 30
- AAI clade 17-18 medoid: human MGYG000001569
- AAI clade 17-19 medoid: human MGYG000003456
- AAI clade 17-20 medoid: human MGYG000003844
- AAI clade 17-21 medoid: pig F5176 bin 23
- AAI clade 17-22 medoid: chicken MGYG000313474
- AAI clade 17-23 medoid: 3300027850 56
- AAI clade 17-24 medoid: human MGYG000000362
- AAI clade 17-25 medoid: human MGYG000001987
- AAI clade 17-26 medoid: pig F4890 bin 34
- AAI clade 17-27 medoid: pig MGYG000302222
- AAI clade 17-28 medoid: pig MGYG000303124
AAI clade 18 medoid: chicken MGYG000313561
AAI clade 19 medoid: 3300024912 1
AAI clade 20 medoid: human MGYG000002619
AAI clade 21 medoid: human MGYG000002428
AAI clade 22 medoid: 3300027805 13
AAI clade 23 medoid: chicken MGYG000314833
AAI clade 24 medoid: wastewater GEMS 3300027794 31
AAI clade 25 medoid: human MGYG000004406
AAI clade 26 medoid: pig MGYG000301788
AAI clade 27 medoid: 3300027834 52
AAI clade 28 medoid: 3300020389 13
AAI clade 29 medoid: 3300027835 270
AAI clade 30 medoid: 3300013004 97
AAI clade 31 medoid: 3300025065 6
AAI clade 32 medoid: human MGYG000004800
AAI clade 33 medoid: ruminant GCA 015060255 1
AAI clade 34 medoid: chicken GCA 019115885 1
AAI clade 35 medoid: pig SAMEA3663026 metabat2 high PE 017
AAI clade 36 medoid: human MGYG000000998
AAI clade 37 medoid: 3300012919 27
AAI clade 38 medoid: 3300027851 42
AAI clade 39 medoid: wastewater ye ASMAG566

AAI-based medoid clustering

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