AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: human MGYG000000946
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AAI clade 2
medoid: human MGYG000000019
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AAI clade 3
medoid: human MGYG000003370
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AAI clade 4
medoid: 3300027323 37
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AAI clade 5
medoid: human MGYG000004185
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AAI clade 6
medoid: human MGYG000001010
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AAI clade 7
medoid: wastewater GEMS 3300025861 51
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AAI clade 8
medoid: human MGYG000002603
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AAI clade 9
medoid: 3300024953 8
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AAI clade 10
medoid: 3300017423 5
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AAI clade 11
medoid: pig GCA 946405745 1
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AAI clade 12
medoid: 3300006192 20
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AAI clade 13
medoid: pig LW1 s150947 bin 23
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AAI clade 14
medoid: dog Snoopy p1 metabat2 high PE 009
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AAI clade 15
medoid: pig MGYG000302081
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AAI clade 16
medoid: human MGYG000000545
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AAI clade 17
medoid: human MGYG000003895
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AAI clade 17-1
medoid: human MGYG000003895
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AAI clade 17-1-1
medoid: human MGYG000001673
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AAI clade 17-1-2
medoid: human MGYG000003895
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AAI clade 17-1-3
medoid: chicken GCA 018712465 1
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AAI clade 17-1-4
medoid: pig F5457 bin 30
5 datasets: chicken GCA 018713425 1 (AAI: 51.6%), human MGYG000001218 (AAI: 51.3%), chicken GCA 018714445 1 (AAI: 71.04%), human MGYG000004044 (AAI: 73.39%), and pig F5457 bin 30 (AAI: 100.0%)
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AAI clade 17-1-5
medoid: chicken GCA 018714125 1
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AAI clade 17-1-6
medoid: human MGYG000002147
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AAI clade 17-1-7
medoid: chicken MGYG000310733
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AAI clade 17-1-8
medoid: pig F5235 bin 65
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AAI clade 17-1-9
medoid: human MGYG000002684
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AAI clade 17-1-10
medoid: human MGYG000003876
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AAI clade 17-1-11
medoid: human MGYG000004145
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AAI clade 17-1-12
medoid: chicken MGYG000318493
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AAI clade 17-1-13
medoid: ruminant GCA 015067145 1
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AAI clade 17-1-14
medoid: human MGYG000000689
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AAI clade 17-1-15
medoid: human MGYG000000718
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AAI clade 17-1-16
medoid: human MGYG000004131
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AAI clade 17-1-17
medoid: pig MGYG000301560
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AAI clade 17-1-18
medoid: ruminant X409 Impala metabat2 high PE 002
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AAI clade 17-1-19
medoid: pig QHF6 unmapped bin 41
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AAI clade 17-1-20
medoid: septage norm maxbin 014
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AAI clade 17-1-21
medoid: 3300027856 27
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AAI clade 17-1-22
medoid: wastewater GEMS 3300025605 10
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AAI clade 17-1-23
medoid: 3300028602 37
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AAI clade 17-1-24
medoid: 3300002098 3
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AAI clade 17-1-25
medoid: 3300013130 46
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AAI clade 17-1-26
medoid: 3300024433 33
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AAI clade 17-1-27
medoid: 3300026512 30
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AAI clade 17-1-28
medoid: 3300028398 35
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AAI clade 17-1-29
medoid: 3300011013 29
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AAI clade 17-1-30
medoid: 3300012952 41
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AAI clade 17-1-31
medoid: 3300013123 101
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AAI clade 17-1-32
medoid: 3300014208 81
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AAI clade 17-1-33
medoid: wastewater ye ASMAG1955
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AAI clade 17-1-34
medoid: 3300013130 142
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AAI clade 17-1-35
medoid: 3300028175 21
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AAI clade 17-1-36
medoid: 3300024333 11
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AAI clade 17-1-37
medoid: 3300013137 183
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AAI clade 17-1-38
medoid: 3300013138 83
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AAI clade 17-1-39
medoid: 3300029821 8
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AAI clade 17-1-40
medoid: 3300027819 118
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AAI clade 17-1-41
medoid: 3300027851 61
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AAI clade 17-1-42
medoid: wastewater ye ASMAG1116
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AAI clade 17-1-43
medoid: 3300022752 27
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AAI clade 17-1-44
medoid: wastewater singleton GCA 016699655 1 ASM1669965v1 genomic
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AAI clade 17-1-45
medoid: 3300028581 58
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AAI clade 17-1-46
medoid: 3300027972 7
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AAI clade 17-1-47
medoid: 3300027917 119
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AAI clade 17-1-48
medoid: wastewater ye ASMAG559
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AAI clade 17-1-49
medoid: wastewater GEMS 3300025737 28
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AAI clade 17-1-50
medoid: 3300027835 107
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AAI clade 17-1-51
medoid: wastewater ye ASMAG567
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AAI clade 17-1-52
medoid: wastewater GEMS 3300028635 23
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AAI clade 17-1-53
medoid: 3300027899 14
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AAI clade 17-1-54
medoid: chicken GCA 019118385 1
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AAI clade 17-1-55
medoid: chicken GCA 020809965 1
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AAI clade 17-1-56
medoid: human MGYG000001597
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AAI clade 17-1-57
medoid: human MGYG000000663
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AAI clade 17-1-58
medoid: pig F5284 bin 6
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AAI clade 17-1-59
medoid: pig MGYG000299837
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AAI clade 17-1-60
medoid: pig QHF6 unmapped bin 119
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AAI clade 17-1-61
medoid: ruminant GCA 015067265 1
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AAI clade 17-1-62
medoid: pig S50506B bin 16
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AAI clade 17-1-63
medoid: wastewater GEMS 3300001594 41
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AAI clade 17-1-64
medoid: wastewater GEMS 3300009769 47
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AAI clade 17-1-65
medoid: wastewater GEMS 3300009772 16
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AAI clade 17-1-66
medoid: wastewater GEMS 3300025847 43
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AAI clade 17-1-67
medoid: wastewater GEMS 3300025691 14
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AAI clade 17-1-1
medoid: human MGYG000001673
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AAI clade 17-2
medoid: human MGYG000000392
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AAI clade 17-3
medoid: human MGYG000000646
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AAI clade 17-4
medoid: chicken MGYG000313438
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AAI clade 17-5
medoid: human MGYG000004472
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AAI clade 17-6
medoid: human MGYG000001984
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AAI clade 17-7
medoid: pig MGYG000300534
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AAI clade 17-8
medoid: pig F5018 bin 47
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AAI clade 17-9
medoid: chicken GCA 018710915 1
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AAI clade 17-10
medoid: human MGYG000004807
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AAI clade 17-11
medoid: human MGYG000003428
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AAI clade 17-12
medoid: human MGYG000004779
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AAI clade 17-13
medoid: ruminant GCA 015063485 1
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AAI clade 17-14
medoid: pig Duroc SH FCR LM3 bin 14
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AAI clade 17-15
medoid: pig MGYG000302171
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AAI clade 17-16
medoid: pig Boar s14 bin 37
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AAI clade 17-17
medoid: wastewater GEMS 3300028568 30
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AAI clade 17-18
medoid: human MGYG000001569
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AAI clade 17-19
medoid: human MGYG000003456
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AAI clade 17-20
medoid: human MGYG000003844
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AAI clade 17-21
medoid: pig F5176 bin 23
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AAI clade 17-22
medoid: chicken MGYG000313474
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AAI clade 17-23
medoid: 3300027850 56
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AAI clade 17-24
medoid: human MGYG000000362
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AAI clade 17-25
medoid: human MGYG000001987
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AAI clade 17-26
medoid: pig F4890 bin 34
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AAI clade 17-27
medoid: pig MGYG000302222
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AAI clade 17-28
medoid: pig MGYG000303124
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AAI clade 17-1
medoid: human MGYG000003895
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AAI clade 18
medoid: chicken MGYG000313561
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AAI clade 19
medoid: 3300024912 1
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AAI clade 20
medoid: human MGYG000002619
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AAI clade 21
medoid: human MGYG000002428
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AAI clade 22
medoid: 3300027805 13
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AAI clade 23
medoid: chicken MGYG000314833
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AAI clade 24
medoid: wastewater GEMS 3300027794 31
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AAI clade 25
medoid: human MGYG000004406
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AAI clade 26
medoid: pig MGYG000301788
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AAI clade 27
medoid: 3300027834 52
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AAI clade 28
medoid: 3300020389 13
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AAI clade 29
medoid: 3300027835 270
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AAI clade 30
medoid: 3300013004 97
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AAI clade 31
medoid: 3300025065 6
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AAI clade 32
medoid: human MGYG000004800
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AAI clade 33
medoid: ruminant GCA 015060255 1
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AAI clade 34
medoid: chicken GCA 019115885 1
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AAI clade 35
medoid: pig SAMEA3663026 metabat2 high PE 017
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AAI clade 36
medoid: human MGYG000000998
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AAI clade 37
medoid: 3300012919 27
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AAI clade 38
medoid: 3300027851 42
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AAI clade 39
medoid: wastewater ye ASMAG566