AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: human MGYG000000946
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AAI clade 2
medoid: human MGYG000000019
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AAI clade 3
medoid: human MGYG000003370
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AAI clade 4
medoid: 3300027323 37
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AAI clade 5
medoid: human MGYG000004185
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AAI clade 6
medoid: human MGYG000001010
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AAI clade 7
medoid: wastewater GEMS 3300025861 51
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AAI clade 8
medoid: human MGYG000002603
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AAI clade 9
medoid: 3300024953 8
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AAI clade 10
medoid: 3300017423 5
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AAI clade 11
medoid: pig GCA 946405745 1
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AAI clade 11-1
medoid: pig GCA 946405745 1
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AAI clade 11-2
medoid: human MGYG000002486
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AAI clade 11-3
medoid: human MGYG000003114
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AAI clade 11-4
medoid: pig MGYG000302445
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AAI clade 11-5
medoid: dog SAMEA103957793 metabat2 high PE 001
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AAI clade 11-5-1
medoid: dog Skinner p2 metabat2 high PE 010
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AAI clade 11-5-2
medoid: dog SAMEA103957793 metabat2 high PE 001
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AAI clade 11-5-2-1
medoid: dog SAMEA103957793 metabat2 high PE 001
5 datasets: cow GCA 020809405 1 (AAI: 83.63%), bird X276 Barnacle Goose maxbin2 high prob 005 (AAI: 83.81%), dog SAMEA103957793 metabat2 high PE 001 (AAI: 100.0%), human MGYG000000102 (AAI: 89.1%), and human MGYG000001623 (AAI: 91.93%)
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AAI clade 11-5-2-2
medoid: 3300018411 15
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AAI clade 11-5-2-3
medoid: human MGYG000003743
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AAI clade 11-5-2-4
medoid: human MGYG000003753
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AAI clade 11-5-2-5
medoid: human MGYG000004232
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AAI clade 11-5-2-6
medoid: pig MGYG000301224
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AAI clade 11-5-2-7
medoid: pig MGYG000302478
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AAI clade 11-5-2-8
medoid: pig QHF6 unmapped bin 521
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AAI clade 11-5-2-9
medoid: wastewater GEMS 3300001567 47
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AAI clade 11-5-2-1
medoid: dog SAMEA103957793 metabat2 high PE 001
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AAI clade 11-5-3
medoid: human MGYG000001234
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AAI clade 11-5-4
medoid: 3300009083 187
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AAI clade 11-5-5
medoid: 3300014208 146
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AAI clade 11-5-6
medoid: 3300009702 181
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AAI clade 11-5-7
medoid: 3300013103 63
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AAI clade 11-5-8
medoid: 3300013136 189
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AAI clade 11-5-9
medoid: 3300017533 60
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AAI clade 11-5-10
medoid: 3300020074 87
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AAI clade 11-5-11
medoid: 3300020213 59
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AAI clade 11-5-12
medoid: 3300020596 52
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AAI clade 11-5-13
medoid: 3300021512 10
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AAI clade 11-5-14
medoid: 3300022888 29
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AAI clade 11-5-15
medoid: 3300022916 45
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AAI clade 11-5-16
medoid: 3300024265 33
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AAI clade 11-5-17
medoid: 3300026512 35
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AAI clade 11-5-18
medoid: 3300027819 177
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AAI clade 11-5-19
medoid: 3300027835 104
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AAI clade 11-5-20
medoid: 3300027851 37
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AAI clade 11-5-21
medoid: 3300028032 39
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AAI clade 11-5-22
medoid: wastewater GEMS 3300025597 57
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AAI clade 11-5-23
medoid: human MGYG000000049
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AAI clade 11-5-24
medoid: human MGYG000000157
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AAI clade 11-5-25
medoid: pig MGYG000302071
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AAI clade 11-5-26
medoid: human MGYG000002370
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AAI clade 11-5-27
medoid: human MGYG000003708
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AAI clade 11-5-28
medoid: pig QHF6 unmapped bin 149
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AAI clade 11-5-29
medoid: wastewater GEMS 3300002702 20
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AAI clade 11-5-30
medoid: wastewater GEMS 3300012533 89
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AAI clade 11-5-31
medoid: wastewater GEMS 3300025471 57
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AAI clade 11-5-32
medoid: wastewater GEMS 3300025618 40
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AAI clade 11-5-33
medoid: wastewater GEMS 3300025784 74
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AAI clade 11-5-34
medoid: wastewater GEMS 3300028622 4
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AAI clade 11-5-35
medoid: wastewater GEMS 3300028633 20
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AAI clade 11-5-36
medoid: wastewater GEMS 3300028641 13
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AAI clade 11-5-37
medoid: wastewater singleton GCA 016700095 1 ASM1670009v1 genomic
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AAI clade 11-5-38
medoid: wastewater ye ASMAG1830
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AAI clade 11-5-39
medoid: wastewater ye ASMAG837
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AAI clade 11-5-40
medoid: wastewater ye ASMAG855
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AAI clade 11-5-41
medoid: wastewater ye ASMAG911
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AAI clade 11-5-1
medoid: dog Skinner p2 metabat2 high PE 010
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AAI clade 11-6
medoid: chicken MHCFR05601 metabat2 low PE 003
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AAI clade 11-7
medoid: pig QHF6 unmapped bin 170
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AAI clade 11-8
medoid: chicken DSLFR04102 metabat2 low PE 033
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AAI clade 11-9
medoid: pig LW1 s150971 bin 26
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AAI clade 11-10
medoid: chicken MGYG000315728
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AAI clade 11-11
medoid: human MGYG000002887
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AAI clade 11-12
medoid: pig F5110 bin 54
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AAI clade 11-13
medoid: human MGYG000001535
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AAI clade 11-14
medoid: 3300024353 70
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AAI clade 11-15
medoid: human MGYG000003150
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AAI clade 11-16
medoid: 3300013132 34
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AAI clade 11-17
medoid: human MGYG000002821
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AAI clade 11-18
medoid: human MGYG000002901
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AAI clade 11-19
medoid: human MGYG000001350
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AAI clade 11-1
medoid: pig GCA 946405745 1
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AAI clade 12
medoid: 3300006192 20
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AAI clade 13
medoid: pig LW1 s150947 bin 23
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AAI clade 14
medoid: dog Snoopy p1 metabat2 high PE 009
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AAI clade 15
medoid: pig MGYG000302081
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AAI clade 16
medoid: human MGYG000000545
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AAI clade 17
medoid: human MGYG000003895
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AAI clade 18
medoid: chicken MGYG000313561
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AAI clade 19
medoid: 3300024912 1
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AAI clade 20
medoid: human MGYG000002619
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AAI clade 21
medoid: human MGYG000002428
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AAI clade 22
medoid: 3300027805 13
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AAI clade 23
medoid: chicken MGYG000314833
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AAI clade 24
medoid: wastewater GEMS 3300027794 31
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AAI clade 25
medoid: human MGYG000004406
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AAI clade 26
medoid: pig MGYG000301788
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AAI clade 27
medoid: 3300027834 52
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AAI clade 28
medoid: 3300020389 13
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AAI clade 29
medoid: 3300027835 270
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AAI clade 30
medoid: 3300013004 97
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AAI clade 31
medoid: 3300025065 6
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AAI clade 32
medoid: human MGYG000004800
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AAI clade 33
medoid: ruminant GCA 015060255 1
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AAI clade 34
medoid: chicken GCA 019115885 1
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AAI clade 35
medoid: pig SAMEA3663026 metabat2 high PE 017
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AAI clade 36
medoid: human MGYG000000998
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AAI clade 37
medoid: 3300012919 27
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AAI clade 38
medoid: 3300027851 42
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AAI clade 39
medoid: wastewater ye ASMAG566