AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: human MGYG000000946
  • AAI clade 2 medoid: human MGYG000000019
  • AAI clade 3 medoid: human MGYG000003370
  • AAI clade 4 medoid: 3300027323 37
  • AAI clade 5 medoid: human MGYG000004185
  • AAI clade 6 medoid: human MGYG000001010
  • AAI clade 7 medoid: wastewater GEMS 3300025861 51
  • AAI clade 8 medoid: human MGYG000002603
  • AAI clade 9 medoid: 3300024953 8
  • AAI clade 10 medoid: 3300017423 5
  • AAI clade 11 medoid: pig GCA 946405745 1
    • AAI clade 11-1 medoid: pig GCA 946405745 1
    • AAI clade 11-2 medoid: human MGYG000002486
    • AAI clade 11-3 medoid: human MGYG000003114
    • AAI clade 11-4 medoid: pig MGYG000302445
    • AAI clade 11-5 medoid: dog SAMEA103957793 metabat2 high PE 001
      • AAI clade 11-5-1 medoid: dog Skinner p2 metabat2 high PE 010
      • AAI clade 11-5-2 medoid: dog SAMEA103957793 metabat2 high PE 001
      • AAI clade 11-5-3 medoid: human MGYG000001234
      • AAI clade 11-5-4 medoid: 3300009083 187
      • AAI clade 11-5-5 medoid: 3300014208 146
      • AAI clade 11-5-6 medoid: 3300009702 181
      • AAI clade 11-5-7 medoid: 3300013103 63
      • AAI clade 11-5-8 medoid: 3300013136 189
      • AAI clade 11-5-9 medoid: 3300017533 60
      • AAI clade 11-5-10 medoid: 3300020074 87
      • AAI clade 11-5-11 medoid: 3300020213 59
      • AAI clade 11-5-12 medoid: 3300020596 52
      • AAI clade 11-5-13 medoid: 3300021512 10
      • AAI clade 11-5-14 medoid: 3300022888 29
      • AAI clade 11-5-15 medoid: 3300022916 45
      • AAI clade 11-5-16 medoid: 3300024265 33
      • AAI clade 11-5-17 medoid: 3300026512 35
      • AAI clade 11-5-18 medoid: 3300027819 177
      • AAI clade 11-5-19 medoid: 3300027835 104
      • AAI clade 11-5-20 medoid: 3300027851 37
      • AAI clade 11-5-21 medoid: 3300028032 39
      • AAI clade 11-5-22 medoid: wastewater GEMS 3300025597 57
      • AAI clade 11-5-23 medoid: human MGYG000000049
      • AAI clade 11-5-24 medoid: human MGYG000000157
      • AAI clade 11-5-25 medoid: pig MGYG000302071
      • AAI clade 11-5-26 medoid: human MGYG000002370
      • AAI clade 11-5-27 medoid: human MGYG000003708
      • AAI clade 11-5-28 medoid: pig QHF6 unmapped bin 149
      • AAI clade 11-5-29 medoid: wastewater GEMS 3300002702 20
        1 dataset: wastewater GEMS 3300002702 20 (AAI: 100.0%)
      • AAI clade 11-5-30 medoid: wastewater GEMS 3300012533 89
      • AAI clade 11-5-31 medoid: wastewater GEMS 3300025471 57
      • AAI clade 11-5-32 medoid: wastewater GEMS 3300025618 40
      • AAI clade 11-5-33 medoid: wastewater GEMS 3300025784 74
      • AAI clade 11-5-34 medoid: wastewater GEMS 3300028622 4
      • AAI clade 11-5-35 medoid: wastewater GEMS 3300028633 20
      • AAI clade 11-5-36 medoid: wastewater GEMS 3300028641 13
      • AAI clade 11-5-37 medoid: wastewater singleton GCA 016700095 1 ASM1670009v1 genomic
      • AAI clade 11-5-38 medoid: wastewater ye ASMAG1830
      • AAI clade 11-5-39 medoid: wastewater ye ASMAG837
      • AAI clade 11-5-40 medoid: wastewater ye ASMAG855
      • AAI clade 11-5-41 medoid: wastewater ye ASMAG911
    • AAI clade 11-6 medoid: chicken MHCFR05601 metabat2 low PE 003
    • AAI clade 11-7 medoid: pig QHF6 unmapped bin 170
    • AAI clade 11-8 medoid: chicken DSLFR04102 metabat2 low PE 033
    • AAI clade 11-9 medoid: pig LW1 s150971 bin 26
    • AAI clade 11-10 medoid: chicken MGYG000315728
    • AAI clade 11-11 medoid: human MGYG000002887
    • AAI clade 11-12 medoid: pig F5110 bin 54
    • AAI clade 11-13 medoid: human MGYG000001535
    • AAI clade 11-14 medoid: 3300024353 70
    • AAI clade 11-15 medoid: human MGYG000003150
    • AAI clade 11-16 medoid: 3300013132 34
    • AAI clade 11-17 medoid: human MGYG000002821
    • AAI clade 11-18 medoid: human MGYG000002901
    • AAI clade 11-19 medoid: human MGYG000001350
  • AAI clade 12 medoid: 3300006192 20
  • AAI clade 13 medoid: pig LW1 s150947 bin 23
  • AAI clade 14 medoid: dog Snoopy p1 metabat2 high PE 009
  • AAI clade 15 medoid: pig MGYG000302081
  • AAI clade 16 medoid: human MGYG000000545
  • AAI clade 17 medoid: human MGYG000003895
  • AAI clade 18 medoid: chicken MGYG000313561
  • AAI clade 19 medoid: 3300024912 1
  • AAI clade 20 medoid: human MGYG000002619
  • AAI clade 21 medoid: human MGYG000002428
  • AAI clade 22 medoid: 3300027805 13
  • AAI clade 23 medoid: chicken MGYG000314833
  • AAI clade 24 medoid: wastewater GEMS 3300027794 31
  • AAI clade 25 medoid: human MGYG000004406
  • AAI clade 26 medoid: pig MGYG000301788
  • AAI clade 27 medoid: 3300027834 52
  • AAI clade 28 medoid: 3300020389 13
  • AAI clade 29 medoid: 3300027835 270
  • AAI clade 30 medoid: 3300013004 97
  • AAI clade 31 medoid: 3300025065 6
  • AAI clade 32 medoid: human MGYG000004800
  • AAI clade 33 medoid: ruminant GCA 015060255 1
  • AAI clade 34 medoid: chicken GCA 019115885 1
  • AAI clade 35 medoid: pig SAMEA3663026 metabat2 high PE 017
  • AAI clade 36 medoid: human MGYG000000998
  • AAI clade 37 medoid: 3300012919 27
  • AAI clade 38 medoid: 3300027851 42
  • AAI clade 39 medoid: wastewater ye ASMAG566