AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: human MGYG000000946
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AAI clade 2
medoid: human MGYG000000019
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AAI clade 3
medoid: human MGYG000003370
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AAI clade 4
medoid: 3300027323 37
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AAI clade 5
medoid: human MGYG000004185
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AAI clade 6
medoid: human MGYG000001010
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AAI clade 7
medoid: wastewater GEMS 3300025861 51
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AAI clade 8
medoid: human MGYG000002603
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AAI clade 9
medoid: 3300024953 8
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AAI clade 10
medoid: 3300017423 5
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AAI clade 10-1
medoid: human MGYG000000082
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AAI clade 10-2
medoid: human MGYG000002886
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AAI clade 10-3
medoid: 3300025052 7
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AAI clade 10-4
medoid: 3300028400 25
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AAI clade 10-5
medoid: 3300017423 5
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AAI clade 10-6
medoid: bird GCA 002901425 1
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AAI clade 10-7
medoid: 3300017958 37
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AAI clade 10-8
medoid: 3300025694 19
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AAI clade 10-9
medoid: 3300024320 7
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AAI clade 10-10
medoid: 3300027672 19
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AAI clade 10-11
medoid: 3300026534 43
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AAI clade 10-12
medoid: wastewater singleton GCA 016712865 1 ASM1671286v1 genomic
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AAI clade 10-13
medoid: wastewater singleton GCA 016699715 1 ASM1669971v1 genomic
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AAI clade 10-14
medoid: wastewater ye ASMAG1984
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AAI clade 10-15
medoid: 3300020445 5
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AAI clade 10-16
medoid: 3300025832 16
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AAI clade 10-17
medoid: 3300014843 2
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AAI clade 10-18
medoid: 3300025128 5
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AAI clade 10-19
medoid: 3300025039 9
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AAI clade 10-19-1
medoid: 3300001835 20
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AAI clade 10-19-2
medoid: 3300017518 40
3 datasets: 3300014914 21 (AAI: 61.25%), 3300017518 40 (AAI: 100.0%), and 3300027832 61 (AAI: 77.26%)
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AAI clade 10-19-3
medoid: 3300024321 10
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AAI clade 10-19-4
medoid: 3300025039 9
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AAI clade 10-19-5
medoid: 3300025639 59
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AAI clade 10-19-1
medoid: 3300001835 20
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AAI clade 10-20
medoid: 3300020471 5
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AAI clade 10-21
medoid: 3300020428 11
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AAI clade 10-22
medoid: 3300025114 7
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AAI clade 10-23
medoid: 3300026264 4
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AAI clade 10-24
medoid: 3300024278 8
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AAI clade 10-25
medoid: 3300027834 41
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AAI clade 10-26
medoid: 3300020477 52
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AAI clade 10-27
medoid: wastewater singleton GCA 016721845 1 ASM1672184v1 genomic
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AAI clade 10-28
medoid: wastewater ye ASMAG1069
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AAI clade 10-29
medoid: 3300020255 7
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AAI clade 10-30
medoid: wastewater ye ASMAG1623
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AAI clade 10-31
medoid: 3300027801 7
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AAI clade 10-32
medoid: 3300012920 31
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AAI clade 10-33
medoid: wastewater singleton GCA 016704655 1 ASM1670465v1 genomic
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AAI clade 10-34
medoid: wastewater singleton GCA 016713135 1 ASM1671313v1 genomic
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AAI clade 10-35
medoid: 3300018048 42
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AAI clade 10-36
medoid: 3300025670 25
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AAI clade 10-37
medoid: 3300027870 54
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AAI clade 10-38
medoid: 3300025673 14
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AAI clade 10-39
medoid: 3300027859 10
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AAI clade 10-40
medoid: 3300027779 19
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AAI clade 10-41
medoid: 3300027828 48
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AAI clade 10-42
medoid: wastewater ye ASMAG670
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AAI clade 10-43
medoid: wastewater GEMS 3300012020 16
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AAI clade 10-44
medoid: wastewater ye ASMAG211
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AAI clade 10-1
medoid: human MGYG000000082
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AAI clade 11
medoid: pig GCA 946405745 1
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AAI clade 12
medoid: 3300006192 20
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AAI clade 13
medoid: pig LW1 s150947 bin 23
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AAI clade 14
medoid: dog Snoopy p1 metabat2 high PE 009
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AAI clade 15
medoid: pig MGYG000302081
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AAI clade 16
medoid: human MGYG000000545
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AAI clade 17
medoid: human MGYG000003895
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AAI clade 18
medoid: chicken MGYG000313561
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AAI clade 19
medoid: 3300024912 1
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AAI clade 20
medoid: human MGYG000002619
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AAI clade 21
medoid: human MGYG000002428
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AAI clade 22
medoid: 3300027805 13
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AAI clade 23
medoid: chicken MGYG000314833
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AAI clade 24
medoid: wastewater GEMS 3300027794 31
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AAI clade 25
medoid: human MGYG000004406
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AAI clade 26
medoid: pig MGYG000301788
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AAI clade 27
medoid: 3300027834 52
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AAI clade 28
medoid: 3300020389 13
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AAI clade 29
medoid: 3300027835 270
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AAI clade 30
medoid: 3300013004 97
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AAI clade 31
medoid: 3300025065 6
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AAI clade 32
medoid: human MGYG000004800
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AAI clade 33
medoid: ruminant GCA 015060255 1
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AAI clade 34
medoid: chicken GCA 019115885 1
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AAI clade 35
medoid: pig SAMEA3663026 metabat2 high PE 017
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AAI clade 36
medoid: human MGYG000000998
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AAI clade 37
medoid: 3300012919 27
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AAI clade 38
medoid: 3300027851 42
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AAI clade 39
medoid: wastewater ye ASMAG566