AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: human MGYG000000946
  • AAI clade 2 medoid: human MGYG000000019
  • AAI clade 3 medoid: human MGYG000003370
  • AAI clade 4 medoid: 3300027323 37
  • AAI clade 5 medoid: human MGYG000004185
  • AAI clade 6 medoid: human MGYG000001010
  • AAI clade 7 medoid: wastewater GEMS 3300025861 51
  • AAI clade 8 medoid: human MGYG000002603
  • AAI clade 9 medoid: 3300024953 8
  • AAI clade 10 medoid: 3300017423 5
    • AAI clade 10-1 medoid: human MGYG000000082
    • AAI clade 10-2 medoid: human MGYG000002886
    • AAI clade 10-3 medoid: 3300025052 7
    • AAI clade 10-4 medoid: 3300028400 25
    • AAI clade 10-5 medoid: 3300017423 5
    • AAI clade 10-6 medoid: bird GCA 002901425 1
    • AAI clade 10-7 medoid: 3300017958 37
    • AAI clade 10-8 medoid: 3300025694 19
    • AAI clade 10-9 medoid: 3300024320 7
    • AAI clade 10-10 medoid: 3300027672 19
    • AAI clade 10-11 medoid: 3300026534 43
    • AAI clade 10-12 medoid: wastewater singleton GCA 016712865 1 ASM1671286v1 genomic
    • AAI clade 10-13 medoid: wastewater singleton GCA 016699715 1 ASM1669971v1 genomic
    • AAI clade 10-14 medoid: wastewater ye ASMAG1984
    • AAI clade 10-15 medoid: 3300020445 5
    • AAI clade 10-16 medoid: 3300025832 16
    • AAI clade 10-17 medoid: 3300014843 2
    • AAI clade 10-18 medoid: 3300025128 5
    • AAI clade 10-19 medoid: 3300025039 9
    • AAI clade 10-20 medoid: 3300020471 5
    • AAI clade 10-21 medoid: 3300020428 11
    • AAI clade 10-22 medoid: 3300025114 7
    • AAI clade 10-23 medoid: 3300026264 4
    • AAI clade 10-24 medoid: 3300024278 8
    • AAI clade 10-25 medoid: 3300027834 41
    • AAI clade 10-26 medoid: 3300020477 52
    • AAI clade 10-27 medoid: wastewater singleton GCA 016721845 1 ASM1672184v1 genomic
    • AAI clade 10-28 medoid: wastewater ye ASMAG1069
    • AAI clade 10-29 medoid: 3300020255 7
    • AAI clade 10-30 medoid: wastewater ye ASMAG1623
      • AAI clade 10-30-1 medoid: wastewater singleton GCA 016720075 1 ASM1672007v1 genomic
      • AAI clade 10-30-2 medoid: 3300027804 17
      • AAI clade 10-30-3 medoid: 3300025838 8
      • AAI clade 10-30-4 medoid: wastewater ye ASMAG1696
      • AAI clade 10-30-5 medoid: wastewater ye ASMAG1654
      • AAI clade 10-30-6 medoid: wastewater ye ASMAG1211
    • AAI clade 10-31 medoid: 3300027801 7
    • AAI clade 10-32 medoid: 3300012920 31
    • AAI clade 10-33 medoid: wastewater singleton GCA 016704655 1 ASM1670465v1 genomic
    • AAI clade 10-34 medoid: wastewater singleton GCA 016713135 1 ASM1671313v1 genomic
    • AAI clade 10-35 medoid: 3300018048 42
    • AAI clade 10-36 medoid: 3300025670 25
    • AAI clade 10-37 medoid: 3300027870 54
    • AAI clade 10-38 medoid: 3300025673 14
    • AAI clade 10-39 medoid: 3300027859 10
    • AAI clade 10-40 medoid: 3300027779 19
    • AAI clade 10-41 medoid: 3300027828 48
    • AAI clade 10-42 medoid: wastewater ye ASMAG670
    • AAI clade 10-43 medoid: wastewater GEMS 3300012020 16
    • AAI clade 10-44 medoid: wastewater ye ASMAG211
  • AAI clade 11 medoid: pig GCA 946405745 1
  • AAI clade 12 medoid: 3300006192 20
  • AAI clade 13 medoid: pig LW1 s150947 bin 23
  • AAI clade 14 medoid: dog Snoopy p1 metabat2 high PE 009
  • AAI clade 15 medoid: pig MGYG000302081
  • AAI clade 16 medoid: human MGYG000000545
  • AAI clade 17 medoid: human MGYG000003895
  • AAI clade 18 medoid: chicken MGYG000313561
  • AAI clade 19 medoid: 3300024912 1
  • AAI clade 20 medoid: human MGYG000002619
  • AAI clade 21 medoid: human MGYG000002428
  • AAI clade 22 medoid: 3300027805 13
  • AAI clade 23 medoid: chicken MGYG000314833
  • AAI clade 24 medoid: wastewater GEMS 3300027794 31
  • AAI clade 25 medoid: human MGYG000004406
  • AAI clade 26 medoid: pig MGYG000301788
  • AAI clade 27 medoid: 3300027834 52
  • AAI clade 28 medoid: 3300020389 13
  • AAI clade 29 medoid: 3300027835 270
  • AAI clade 30 medoid: 3300013004 97
  • AAI clade 31 medoid: 3300025065 6
  • AAI clade 32 medoid: human MGYG000004800
  • AAI clade 33 medoid: ruminant GCA 015060255 1
  • AAI clade 34 medoid: chicken GCA 019115885 1
  • AAI clade 35 medoid: pig SAMEA3663026 metabat2 high PE 017
  • AAI clade 36 medoid: human MGYG000000998
  • AAI clade 37 medoid: 3300012919 27
  • AAI clade 38 medoid: 3300027851 42
  • AAI clade 39 medoid: wastewater ye ASMAG566