AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: human MGYG000000946
    • AAI clade 1-1 medoid: human MGYG000000946
    • AAI clade 1-2 medoid: human MGYG000003624
    • AAI clade 1-3 medoid: human MGYG000000907
    • AAI clade 1-4 medoid: human MGYG000000643
      • AAI clade 1-4-1 medoid: chicken GCA 018715725 1
      • AAI clade 1-4-2 medoid: chicken GCA 018712515 1
      • AAI clade 1-4-3 medoid: human MGYG000002544
      • AAI clade 1-4-4 medoid: human MGYG000002487
      • AAI clade 1-4-5 medoid: human MGYG000000577
      • AAI clade 1-4-6 medoid: human MGYG000002451
      • AAI clade 1-4-7 medoid: human MGYG000004189
      • AAI clade 1-4-8 medoid: ruminant GCA 015062615 1
      • AAI clade 1-4-9 medoid: human MGYG000000643
        7 datasets: human MGYG000000597 (AAI: 95.82%), human MGYG000000611 (AAI: 78.69%), human MGYG000000643 (AAI: 100.0%), human MGYG000001387 (AAI: 96.91%), human MGYG000003303 (AAI: 94.69%), human MGYG000004238 (AAI: 83.62%), and human MGYG000004654 (AAI: 95.36%)
      • AAI clade 1-4-10 medoid: human MGYG000004041
      • AAI clade 1-4-11 medoid: human MGYG000001740
      • AAI clade 1-4-12 medoid: human MGYG000004183
      • AAI clade 1-4-13 medoid: human MGYG000002419
      • AAI clade 1-4-14 medoid: human MGYG000002480
      • AAI clade 1-4-15 medoid: pig S133204A bin 66
      • AAI clade 1-4-16 medoid: pig QHF6 unmapped bin 103
      • AAI clade 1-4-17 medoid: pig QHF6 unmapped bin 315
      • AAI clade 1-4-18 medoid: pig QHF6 unmapped bin 320
      • AAI clade 1-4-19 medoid: pig S159812B bin 29
      • AAI clade 1-4-20 medoid: ruminant GCA 015062605 1
      • AAI clade 1-4-21 medoid: ruminant GCA 015062635 1
    • AAI clade 1-5 medoid: human MGYG000002074
    • AAI clade 1-6 medoid: 3300023176 42
    • AAI clade 1-7 medoid: human MGYG000001154
  • AAI clade 2 medoid: human MGYG000000019
  • AAI clade 3 medoid: human MGYG000003370
  • AAI clade 4 medoid: 3300027323 37
  • AAI clade 5 medoid: human MGYG000004185
  • AAI clade 6 medoid: human MGYG000001010
  • AAI clade 7 medoid: wastewater GEMS 3300025861 51
  • AAI clade 8 medoid: human MGYG000002603
  • AAI clade 9 medoid: 3300024953 8
  • AAI clade 10 medoid: 3300017423 5
  • AAI clade 11 medoid: pig GCA 946405745 1
  • AAI clade 12 medoid: 3300006192 20
  • AAI clade 13 medoid: pig LW1 s150947 bin 23
  • AAI clade 14 medoid: dog Snoopy p1 metabat2 high PE 009
  • AAI clade 15 medoid: pig MGYG000302081
  • AAI clade 16 medoid: human MGYG000000545
  • AAI clade 17 medoid: human MGYG000003895
  • AAI clade 18 medoid: chicken MGYG000313561
  • AAI clade 19 medoid: 3300024912 1
  • AAI clade 20 medoid: human MGYG000002619
  • AAI clade 21 medoid: human MGYG000002428
  • AAI clade 22 medoid: 3300027805 13
  • AAI clade 23 medoid: chicken MGYG000314833
  • AAI clade 24 medoid: wastewater GEMS 3300027794 31
  • AAI clade 25 medoid: human MGYG000004406
  • AAI clade 26 medoid: pig MGYG000301788
  • AAI clade 27 medoid: 3300027834 52
  • AAI clade 28 medoid: 3300020389 13
  • AAI clade 29 medoid: 3300027835 270
  • AAI clade 30 medoid: 3300013004 97
  • AAI clade 31 medoid: 3300025065 6
  • AAI clade 32 medoid: human MGYG000004800
  • AAI clade 33 medoid: ruminant GCA 015060255 1
  • AAI clade 34 medoid: chicken GCA 019115885 1
  • AAI clade 35 medoid: pig SAMEA3663026 metabat2 high PE 017
  • AAI clade 36 medoid: human MGYG000000998
  • AAI clade 37 medoid: 3300012919 27
  • AAI clade 38 medoid: 3300027851 42
  • AAI clade 39 medoid: wastewater ye ASMAG566