AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: human MGYG000000946
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AAI clade 1-1
medoid: human MGYG000000946
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AAI clade 1-2
medoid: human MGYG000003624
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AAI clade 1-3
medoid: human MGYG000000907
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AAI clade 1-4
medoid: human MGYG000000643
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AAI clade 1-4-1
medoid: chicken GCA 018715725 1
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AAI clade 1-4-2
medoid: chicken GCA 018712515 1
5 datasets: chicken GCA 018712515 1 (AAI: 100.0%), chicken GCA 018710945 1 (AAI: 70.15%), chicken GCA 018715935 1 (AAI: 74.66%), human MGYG000004592 (AAI: 77.77%), and human MGYG000004900 (AAI: 71.5%)
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AAI clade 1-4-3
medoid: human MGYG000002544
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AAI clade 1-4-4
medoid: human MGYG000002487
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AAI clade 1-4-5
medoid: human MGYG000000577
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AAI clade 1-4-6
medoid: human MGYG000002451
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AAI clade 1-4-7
medoid: human MGYG000004189
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AAI clade 1-4-8
medoid: ruminant GCA 015062615 1
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AAI clade 1-4-9
medoid: human MGYG000000643
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AAI clade 1-4-10
medoid: human MGYG000004041
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AAI clade 1-4-11
medoid: human MGYG000001740
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AAI clade 1-4-12
medoid: human MGYG000004183
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AAI clade 1-4-13
medoid: human MGYG000002419
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AAI clade 1-4-14
medoid: human MGYG000002480
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AAI clade 1-4-15
medoid: pig S133204A bin 66
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AAI clade 1-4-16
medoid: pig QHF6 unmapped bin 103
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AAI clade 1-4-17
medoid: pig QHF6 unmapped bin 315
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AAI clade 1-4-18
medoid: pig QHF6 unmapped bin 320
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AAI clade 1-4-19
medoid: pig S159812B bin 29
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AAI clade 1-4-20
medoid: ruminant GCA 015062605 1
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AAI clade 1-4-21
medoid: ruminant GCA 015062635 1
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AAI clade 1-4-1
medoid: chicken GCA 018715725 1
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AAI clade 1-5
medoid: human MGYG000002074
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AAI clade 1-6
medoid: 3300023176 42
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AAI clade 1-7
medoid: human MGYG000001154
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AAI clade 1-1
medoid: human MGYG000000946
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AAI clade 2
medoid: human MGYG000000019
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AAI clade 3
medoid: human MGYG000003370
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AAI clade 4
medoid: 3300027323 37
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AAI clade 5
medoid: human MGYG000004185
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AAI clade 6
medoid: human MGYG000001010
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AAI clade 7
medoid: wastewater GEMS 3300025861 51
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AAI clade 8
medoid: human MGYG000002603
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AAI clade 9
medoid: 3300024953 8
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AAI clade 10
medoid: 3300017423 5
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AAI clade 11
medoid: pig GCA 946405745 1
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AAI clade 12
medoid: 3300006192 20
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AAI clade 13
medoid: pig LW1 s150947 bin 23
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AAI clade 14
medoid: dog Snoopy p1 metabat2 high PE 009
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AAI clade 15
medoid: pig MGYG000302081
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AAI clade 16
medoid: human MGYG000000545
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AAI clade 17
medoid: human MGYG000003895
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AAI clade 18
medoid: chicken MGYG000313561
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AAI clade 19
medoid: 3300024912 1
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AAI clade 20
medoid: human MGYG000002619
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AAI clade 21
medoid: human MGYG000002428
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AAI clade 22
medoid: 3300027805 13
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AAI clade 23
medoid: chicken MGYG000314833
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AAI clade 24
medoid: wastewater GEMS 3300027794 31
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AAI clade 25
medoid: human MGYG000004406
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AAI clade 26
medoid: pig MGYG000301788
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AAI clade 27
medoid: 3300027834 52
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AAI clade 28
medoid: 3300020389 13
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AAI clade 29
medoid: 3300027835 270
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AAI clade 30
medoid: 3300013004 97
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AAI clade 31
medoid: 3300025065 6
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AAI clade 32
medoid: human MGYG000004800
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AAI clade 33
medoid: ruminant GCA 015060255 1
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AAI clade 34
medoid: chicken GCA 019115885 1
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AAI clade 35
medoid: pig SAMEA3663026 metabat2 high PE 017
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AAI clade 36
medoid: human MGYG000000998
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AAI clade 37
medoid: 3300012919 27
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AAI clade 38
medoid: 3300027851 42
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AAI clade 39
medoid: wastewater ye ASMAG566