AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: human MGYG000000946
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AAI clade 2
medoid: human MGYG000000019
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AAI clade 3
medoid: human MGYG000003370
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AAI clade 4
medoid: 3300027323 37
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AAI clade 5
medoid: human MGYG000004185
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AAI clade 6
medoid: human MGYG000001010
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AAI clade 7
medoid: wastewater GEMS 3300025861 51
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AAI clade 8
medoid: human MGYG000002603
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AAI clade 9
medoid: 3300024953 8
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AAI clade 9-1
medoid: human MGYG000003836
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AAI clade 9-2
medoid: human MGYG000000632
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AAI clade 9-3
medoid: 3300027878 112
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AAI clade 9-4
medoid: human MGYG000002703
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AAI clade 9-5
medoid: 3300025437 3
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AAI clade 9-6
medoid: 3300024955 6
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AAI clade 9-7
medoid: 3300024953 8
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AAI clade 9-7-1
medoid: wastewater singleton GCA 016710425 1 ASM1671042v1 genomic
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AAI clade 9-7-2
medoid: 3300011013 31
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AAI clade 9-7-3
medoid: 3300024953 8
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AAI clade 9-7-4
medoid: 3300028569 59
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AAI clade 9-7-5
medoid: 3300013132 103
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AAI clade 9-7-6
medoid: 3300023208 16
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AAI clade 9-7-7
medoid: 3300022745 9
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AAI clade 9-7-8
medoid: 3300023184 46
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AAI clade 9-7-9
medoid: wastewater singleton GCA 016720065 1 ASM1672006v1 genomic
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AAI clade 9-7-10
medoid: 3300028569 29
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AAI clade 9-7-11
medoid: human MGYG000004780
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AAI clade 9-7-12
medoid: wastewater ye ASMAG1273
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AAI clade 9-7-13
medoid: wastewater singleton GCA 016713625 1 ASM1671362v1 genomic
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AAI clade 9-7-13-1
medoid: wastewater singleton GCA 016713625 1 ASM1671362v1 genomic
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AAI clade 9-7-13-2
medoid: wastewater ye ASMAG1292
1 dataset: wastewater ye ASMAG1292 (AAI: 100.0%)
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AAI clade 9-7-13-3
medoid: wastewater ye ASMAG1354
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AAI clade 9-7-13-4
medoid: wastewater ye ASMAG1405
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AAI clade 9-7-13-5
medoid: wastewater ye ASMAG1443
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AAI clade 9-7-13-1
medoid: wastewater singleton GCA 016713625 1 ASM1671362v1 genomic
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AAI clade 9-7-14
medoid: wastewater singleton GCA 016714975 1 ASM1671497v1 genomic
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AAI clade 9-7-15
medoid: wastewater ye ASMAG272
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AAI clade 9-7-1
medoid: wastewater singleton GCA 016710425 1 ASM1671042v1 genomic
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AAI clade 9-8
medoid: wastewater singleton GCA 016716965 1 ASM1671696v1 genomic
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AAI clade 9-1
medoid: human MGYG000003836
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AAI clade 10
medoid: 3300017423 5
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AAI clade 11
medoid: pig GCA 946405745 1
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AAI clade 12
medoid: 3300006192 20
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AAI clade 13
medoid: pig LW1 s150947 bin 23
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AAI clade 14
medoid: dog Snoopy p1 metabat2 high PE 009
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AAI clade 15
medoid: pig MGYG000302081
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AAI clade 16
medoid: human MGYG000000545
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AAI clade 17
medoid: human MGYG000003895
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AAI clade 18
medoid: chicken MGYG000313561
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AAI clade 19
medoid: 3300024912 1
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AAI clade 20
medoid: human MGYG000002619
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AAI clade 21
medoid: human MGYG000002428
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AAI clade 22
medoid: 3300027805 13
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AAI clade 23
medoid: chicken MGYG000314833
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AAI clade 24
medoid: wastewater GEMS 3300027794 31
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AAI clade 25
medoid: human MGYG000004406
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AAI clade 26
medoid: pig MGYG000301788
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AAI clade 27
medoid: 3300027834 52
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AAI clade 28
medoid: 3300020389 13
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AAI clade 29
medoid: 3300027835 270
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AAI clade 30
medoid: 3300013004 97
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AAI clade 31
medoid: 3300025065 6
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AAI clade 32
medoid: human MGYG000004800
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AAI clade 33
medoid: ruminant GCA 015060255 1
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AAI clade 34
medoid: chicken GCA 019115885 1
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AAI clade 35
medoid: pig SAMEA3663026 metabat2 high PE 017
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AAI clade 36
medoid: human MGYG000000998
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AAI clade 37
medoid: 3300012919 27
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AAI clade 38
medoid: 3300027851 42
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AAI clade 39
medoid: wastewater ye ASMAG566