AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
-
AAI clade 1
medoid: human MGYG000000946
-
AAI clade 2
medoid: human MGYG000000019
-
AAI clade 3
medoid: human MGYG000003370
-
AAI clade 4
medoid: 3300027323 37
-
AAI clade 5
medoid: human MGYG000004185
-
AAI clade 6
medoid: human MGYG000001010
-
AAI clade 7
medoid: wastewater GEMS 3300025861 51
-
AAI clade 8
medoid: human MGYG000002603
-
AAI clade 9
medoid: 3300024953 8
-
AAI clade 9-1
medoid: human MGYG000003836
-
AAI clade 9-2
medoid: human MGYG000000632
-
AAI clade 9-2-1
medoid: cat SAMEA3387466 metabat2 low PE 002
-
AAI clade 9-2-2
medoid: chicken MGYG000313085
-
AAI clade 9-2-3
medoid: chicken MGYG000316626
-
AAI clade 9-2-4
medoid: dog Escalade p2 maxbin2 low prob 018
-
AAI clade 9-2-5
medoid: dog Magnolia p2 metabat2 high PE 017
-
AAI clade 9-2-6
medoid: human MGYG000000632
-
AAI clade 9-2-7
medoid: human MGYG000004647
-
AAI clade 9-2-8
medoid: human MGYG000000560
-
AAI clade 9-2-9
medoid: human MGYG000004694
-
AAI clade 9-2-10
medoid: human MGYG000002447
-
AAI clade 9-2-11
medoid: human MGYG000003288
-
AAI clade 9-2-12
medoid: human MGYG000004704
-
AAI clade 9-2-13
medoid: pig GCA 022809315 1
1 dataset: pig GCA 022809315 1 (AAI: 100.0%)
-
AAI clade 9-2-1
medoid: cat SAMEA3387466 metabat2 low PE 002
-
AAI clade 9-3
medoid: 3300027878 112
-
AAI clade 9-4
medoid: human MGYG000002703
-
AAI clade 9-5
medoid: 3300025437 3
-
AAI clade 9-6
medoid: 3300024955 6
-
AAI clade 9-7
medoid: 3300024953 8
-
AAI clade 9-8
medoid: wastewater singleton GCA 016716965 1 ASM1671696v1 genomic
-
AAI clade 9-1
medoid: human MGYG000003836
-
AAI clade 10
medoid: 3300017423 5
-
AAI clade 11
medoid: pig GCA 946405745 1
-
AAI clade 12
medoid: 3300006192 20
-
AAI clade 13
medoid: pig LW1 s150947 bin 23
-
AAI clade 14
medoid: dog Snoopy p1 metabat2 high PE 009
-
AAI clade 15
medoid: pig MGYG000302081
-
AAI clade 16
medoid: human MGYG000000545
-
AAI clade 17
medoid: human MGYG000003895
-
AAI clade 18
medoid: chicken MGYG000313561
-
AAI clade 19
medoid: 3300024912 1
-
AAI clade 20
medoid: human MGYG000002619
-
AAI clade 21
medoid: human MGYG000002428
-
AAI clade 22
medoid: 3300027805 13
-
AAI clade 23
medoid: chicken MGYG000314833
-
AAI clade 24
medoid: wastewater GEMS 3300027794 31
-
AAI clade 25
medoid: human MGYG000004406
-
AAI clade 26
medoid: pig MGYG000301788
-
AAI clade 27
medoid: 3300027834 52
-
AAI clade 28
medoid: 3300020389 13
-
AAI clade 29
medoid: 3300027835 270
-
AAI clade 30
medoid: 3300013004 97
-
AAI clade 31
medoid: 3300025065 6
-
AAI clade 32
medoid: human MGYG000004800
-
AAI clade 33
medoid: ruminant GCA 015060255 1
-
AAI clade 34
medoid: chicken GCA 019115885 1
-
AAI clade 35
medoid: pig SAMEA3663026 metabat2 high PE 017
-
AAI clade 36
medoid: human MGYG000000998
-
AAI clade 37
medoid: 3300012919 27
-
AAI clade 38
medoid: 3300027851 42
-
AAI clade 39
medoid: wastewater ye ASMAG566