AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: human MGYG000000946
  • AAI clade 2 medoid: human MGYG000000019
  • AAI clade 3 medoid: human MGYG000003370
  • AAI clade 4 medoid: 3300027323 37
  • AAI clade 5 medoid: human MGYG000004185
  • AAI clade 6 medoid: human MGYG000001010
  • AAI clade 7 medoid: wastewater GEMS 3300025861 51
  • AAI clade 8 medoid: human MGYG000002603
  • AAI clade 9 medoid: 3300024953 8
    • AAI clade 9-1 medoid: human MGYG000003836
      • AAI clade 9-1-1 medoid: human MGYG000003352
      • AAI clade 9-1-2 medoid: human MGYG000003836
      • AAI clade 9-1-3 medoid: human MGYG000000351
      • AAI clade 9-1-4 medoid: chicken MGYG000314751
      • AAI clade 9-1-5 medoid: human MGYG000001113
      • AAI clade 9-1-6 medoid: chicken MGYG000316607
      • AAI clade 9-1-7 medoid: human MGYG000000475
      • AAI clade 9-1-8 medoid: 3300027806 33
      • AAI clade 9-1-9 medoid: 3300027831 10
      • AAI clade 9-1-10 medoid: 3300027972 6
      • AAI clade 9-1-11 medoid: human MGYG000000552
      • AAI clade 9-1-12 medoid: human MGYG000000624
        1 dataset: human MGYG000000624 (AAI: 100.0%)
      • AAI clade 9-1-13 medoid: human MGYG000000796
      • AAI clade 9-1-14 medoid: wastewater singleton GCA 016716275 1 ASM1671627v1 genomic
    • AAI clade 9-2 medoid: human MGYG000000632
    • AAI clade 9-3 medoid: 3300027878 112
    • AAI clade 9-4 medoid: human MGYG000002703
    • AAI clade 9-5 medoid: 3300025437 3
    • AAI clade 9-6 medoid: 3300024955 6
    • AAI clade 9-7 medoid: 3300024953 8
    • AAI clade 9-8 medoid: wastewater singleton GCA 016716965 1 ASM1671696v1 genomic
  • AAI clade 10 medoid: 3300017423 5
  • AAI clade 11 medoid: pig GCA 946405745 1
  • AAI clade 12 medoid: 3300006192 20
  • AAI clade 13 medoid: pig LW1 s150947 bin 23
  • AAI clade 14 medoid: dog Snoopy p1 metabat2 high PE 009
  • AAI clade 15 medoid: pig MGYG000302081
  • AAI clade 16 medoid: human MGYG000000545
  • AAI clade 17 medoid: human MGYG000003895
  • AAI clade 18 medoid: chicken MGYG000313561
  • AAI clade 19 medoid: 3300024912 1
  • AAI clade 20 medoid: human MGYG000002619
  • AAI clade 21 medoid: human MGYG000002428
  • AAI clade 22 medoid: 3300027805 13
  • AAI clade 23 medoid: chicken MGYG000314833
  • AAI clade 24 medoid: wastewater GEMS 3300027794 31
  • AAI clade 25 medoid: human MGYG000004406
  • AAI clade 26 medoid: pig MGYG000301788
  • AAI clade 27 medoid: 3300027834 52
  • AAI clade 28 medoid: 3300020389 13
  • AAI clade 29 medoid: 3300027835 270
  • AAI clade 30 medoid: 3300013004 97
  • AAI clade 31 medoid: 3300025065 6
  • AAI clade 32 medoid: human MGYG000004800
  • AAI clade 33 medoid: ruminant GCA 015060255 1
  • AAI clade 34 medoid: chicken GCA 019115885 1
  • AAI clade 35 medoid: pig SAMEA3663026 metabat2 high PE 017
  • AAI clade 36 medoid: human MGYG000000998
  • AAI clade 37 medoid: 3300012919 27
  • AAI clade 38 medoid: 3300027851 42
  • AAI clade 39 medoid: wastewater ye ASMAG566