AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: human MGYG000000946
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AAI clade 2
medoid: human MGYG000000019
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AAI clade 3
medoid: human MGYG000003370
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AAI clade 4
medoid: 3300027323 37
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AAI clade 5
medoid: human MGYG000004185
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AAI clade 6
medoid: human MGYG000001010
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AAI clade 7
medoid: wastewater GEMS 3300025861 51
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AAI clade 7-1
medoid: human MGYG000002687
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AAI clade 7-2
medoid: chicken MGYG000310465
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AAI clade 7-3
medoid: wastewater ye ASMAG1095
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AAI clade 7-4
medoid: wastewater GEMS 3300029233 1
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AAI clade 7-4-1
medoid: wastewater ye ASMAG1906
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AAI clade 7-4-2
medoid: wastewater ye ASMAG1706
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AAI clade 7-4-3
medoid: 3300020423 38
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AAI clade 7-4-4
medoid: 3300001683 37
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AAI clade 7-4-5
medoid: 3300017485 6
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AAI clade 7-4-6
medoid: 3300027975 9
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AAI clade 7-4-7
medoid: 3300024516 18
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AAI clade 7-4-8
medoid: wastewater GEMS 3300029233 1
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AAI clade 7-4-8-1
medoid: wastewater GEMS 3300013833 6
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AAI clade 7-4-8-2
medoid: wastewater GEMS 3300029233 1
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AAI clade 7-4-8-3
medoid: wastewater GEMS 3300029446 9
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AAI clade 7-4-8-4
medoid: wastewater ye ASMAG482
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AAI clade 7-4-8-5
medoid: wastewater ye ASMAG1630
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AAI clade 7-4-8-6
medoid: wastewater ye ASMAG1724
1 dataset: wastewater ye ASMAG1724 (AAI: 100.0%)
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AAI clade 7-4-8-7
medoid: wastewater ye ASMAG1732
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AAI clade 7-4-8-8
medoid: wastewater ye ASMAG1764
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AAI clade 7-4-8-9
medoid: wastewater ye ASMAG1827
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AAI clade 7-4-8-1
medoid: wastewater GEMS 3300013833 6
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AAI clade 7-4-1
medoid: wastewater ye ASMAG1906
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AAI clade 7-5
medoid: 3300013136 95
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AAI clade 7-6
medoid: 3300014060 37
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AAI clade 7-7
medoid: 3300024980 1
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AAI clade 7-8
medoid: chicken MGYG000312033
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AAI clade 7-9
medoid: human MGYG000000358
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AAI clade 7-10
medoid: human MGYG000000551
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AAI clade 7-11
medoid: wastewater singleton GCA 016720395 1 ASM1672039v1 genomic
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AAI clade 7-12
medoid: human MGYG000003933
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AAI clade 7-13
medoid: 3300013136 83
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AAI clade 7-14
medoid: 3300027790 46
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AAI clade 7-15
medoid: 3300000150 3
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AAI clade 7-16
medoid: 3300020477 98
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AAI clade 7-17
medoid: 3300027858 31
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AAI clade 7-18
medoid: 3300001782 37
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AAI clade 7-19
medoid: 3300020221 81
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AAI clade 7-20
medoid: 3300024956 5
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AAI clade 7-21
medoid: 3300013097 2
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AAI clade 7-22
medoid: 3300000854 1
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AAI clade 7-23
medoid: 3300027622 17
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AAI clade 7-24
medoid: 3300024344 6
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AAI clade 7-25
medoid: 3300009703 34
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AAI clade 7-26
medoid: wastewater singleton GCA 016699405 1 ASM1669940v1 genomic
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AAI clade 7-27
medoid: 3300002481 28
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AAI clade 7-28
medoid: 3300017532 17
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AAI clade 7-29
medoid: 3300027677 15
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AAI clade 7-30
medoid: wastewater ye ASMAG324
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AAI clade 7-31
medoid: wastewater singleton GCA 016700195 1 ASM1670019v1 genomic
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AAI clade 7-32
medoid: 3300029821 19
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AAI clade 7-33
medoid: 3300026512 23
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AAI clade 7-34
medoid: 3300022902 11
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AAI clade 7-35
medoid: 3300027677 20
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AAI clade 7-36
medoid: wastewater singleton GCA 016716175 1 ASM1671617v1 genomic
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AAI clade 7-37
medoid: wastewater ye ASMAG184
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AAI clade 7-38
medoid: 3300013014 12
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AAI clade 7-39
medoid: 3300013138 89
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AAI clade 7-40
medoid: wastewater GEMS 3300025882 19
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AAI clade 7-41
medoid: wastewater ye ASMAG60
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AAI clade 7-42
medoid: wastewater ye ASMAG1291
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AAI clade 7-43
medoid: wastewater ye ASMAG757
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AAI clade 7-44
medoid: wastewater ye ASMAG182
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AAI clade 7-45
medoid: wastewater ye ASMAG1409
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AAI clade 7-46
medoid: wastewater ye ASMAG476
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AAI clade 7-47
medoid: 3300024353 27
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AAI clade 7-48
medoid: wastewater ye ASMAG1302
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AAI clade 7-49
medoid: wastewater GEMS 3300012018 2
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AAI clade 7-50
medoid: wastewater GEMS 3300013232 46
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AAI clade 7-51
medoid: 3300018018 15
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AAI clade 7-52
medoid: 3300027337 6
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AAI clade 7-53
medoid: 3300013137 110
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AAI clade 7-54
medoid: 3300027900 79
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AAI clade 7-55
medoid: 3300027900 29
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AAI clade 7-56
medoid: 3300027893 53
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AAI clade 7-57
medoid: 3300021499 3
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AAI clade 7-58
medoid: 3300017423 14
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AAI clade 7-59
medoid: 3300027900 35
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AAI clade 7-60
medoid: 3300027835 33
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AAI clade 7-61
medoid: 3300027815 70
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AAI clade 7-62
medoid: septage trim metabat 8
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AAI clade 7-63
medoid: 3300028581 72
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AAI clade 7-64
medoid: 3300027896 88
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AAI clade 7-65
medoid: wastewater singleton GCA 016720205 1 ASM1672020v1 genomic
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AAI clade 7-66
medoid: wastewater singleton GCA 016712675 1 ASM1671267v1 genomic
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AAI clade 7-67
medoid: wastewater GEMS 3300025882 23
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AAI clade 7-68
medoid: 3300025409 1
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AAI clade 7-69
medoid: wastewater ye ASMAG1139
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AAI clade 7-70
medoid: 3300019761 5
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AAI clade 7-71
medoid: wastewater ye ASMAG896
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AAI clade 7-72
medoid: wastewater singleton GCA 016717175 1 ASM1671717v1 genomic
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AAI clade 7-73
medoid: 3300026382 4
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AAI clade 7-74
medoid: wastewater ye ASMAG1891
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AAI clade 7-75
medoid: wastewater GEMS 3300026516 18
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AAI clade 7-76
medoid: wastewater singleton GCA 016704275 1 ASM1670427v1 genomic
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AAI clade 7-77
medoid: wastewater ye ASMAG761
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AAI clade 7-78
medoid: wastewater ye ASMAG306
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AAI clade 7-1
medoid: human MGYG000002687
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AAI clade 8
medoid: human MGYG000002603
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AAI clade 9
medoid: 3300024953 8
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AAI clade 10
medoid: 3300017423 5
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AAI clade 11
medoid: pig GCA 946405745 1
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AAI clade 12
medoid: 3300006192 20
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AAI clade 13
medoid: pig LW1 s150947 bin 23
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AAI clade 14
medoid: dog Snoopy p1 metabat2 high PE 009
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AAI clade 15
medoid: pig MGYG000302081
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AAI clade 16
medoid: human MGYG000000545
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AAI clade 17
medoid: human MGYG000003895
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AAI clade 18
medoid: chicken MGYG000313561
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AAI clade 19
medoid: 3300024912 1
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AAI clade 20
medoid: human MGYG000002619
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AAI clade 21
medoid: human MGYG000002428
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AAI clade 22
medoid: 3300027805 13
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AAI clade 23
medoid: chicken MGYG000314833
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AAI clade 24
medoid: wastewater GEMS 3300027794 31
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AAI clade 25
medoid: human MGYG000004406
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AAI clade 26
medoid: pig MGYG000301788
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AAI clade 27
medoid: 3300027834 52
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AAI clade 28
medoid: 3300020389 13
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AAI clade 29
medoid: 3300027835 270
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AAI clade 30
medoid: 3300013004 97
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AAI clade 31
medoid: 3300025065 6
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AAI clade 32
medoid: human MGYG000004800
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AAI clade 33
medoid: ruminant GCA 015060255 1
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AAI clade 34
medoid: chicken GCA 019115885 1
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AAI clade 35
medoid: pig SAMEA3663026 metabat2 high PE 017
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AAI clade 36
medoid: human MGYG000000998
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AAI clade 37
medoid: 3300012919 27
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AAI clade 38
medoid: 3300027851 42
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AAI clade 39
medoid: wastewater ye ASMAG566