AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: human MGYG000000946
  • AAI clade 2 medoid: human MGYG000000019
  • AAI clade 3 medoid: human MGYG000003370
  • AAI clade 4 medoid: 3300027323 37
  • AAI clade 5 medoid: human MGYG000004185
  • AAI clade 6 medoid: human MGYG000001010
  • AAI clade 7 medoid: wastewater GEMS 3300025861 51
    • AAI clade 7-1 medoid: human MGYG000002687
    • AAI clade 7-2 medoid: chicken MGYG000310465
    • AAI clade 7-3 medoid: wastewater ye ASMAG1095
    • AAI clade 7-4 medoid: wastewater GEMS 3300029233 1
    • AAI clade 7-5 medoid: 3300013136 95
    • AAI clade 7-6 medoid: 3300014060 37
    • AAI clade 7-7 medoid: 3300024980 1
    • AAI clade 7-8 medoid: chicken MGYG000312033
    • AAI clade 7-9 medoid: human MGYG000000358
    • AAI clade 7-10 medoid: human MGYG000000551
    • AAI clade 7-11 medoid: wastewater singleton GCA 016720395 1 ASM1672039v1 genomic
    • AAI clade 7-12 medoid: human MGYG000003933
    • AAI clade 7-13 medoid: 3300013136 83
    • AAI clade 7-14 medoid: 3300027790 46
    • AAI clade 7-15 medoid: 3300000150 3
    • AAI clade 7-16 medoid: 3300020477 98
    • AAI clade 7-17 medoid: 3300027858 31
    • AAI clade 7-18 medoid: 3300001782 37
    • AAI clade 7-19 medoid: 3300020221 81
      • AAI clade 7-19-1 medoid: 3300020221 81
        • AAI clade 7-19-1-1 medoid: 3300020221 81
          • AAI clade 7-19-1-1-1 medoid: 3300020221 81
            • AAI clade 7-19-1-1-1-1 medoid: 3300020221 81
              • AAI clade 7-19-1-1-1-1-1 medoid: 3300000227 8
              • AAI clade 7-19-1-1-1-1-2 medoid: 3300013133 46
              • AAI clade 7-19-1-1-1-1-3 medoid: 3300020221 81
              • AAI clade 7-19-1-1-1-1-4 medoid: 3300024054 31
              • AAI clade 7-19-1-1-1-1-5 medoid: septage trim maxbin 009
              • AAI clade 7-19-1-1-1-1-6 medoid: wastewater GEMS 3300001095 13
            • AAI clade 7-19-1-1-1-2 medoid: 3300013138 84
            • AAI clade 7-19-1-1-1-3 medoid: 3300014199 13
            • AAI clade 7-19-1-1-1-4 medoid: 3300028399 36
          • AAI clade 7-19-1-1-2 medoid: 3300015370 49
          • AAI clade 7-19-1-1-3 medoid: wastewater ye ASMAG1035
        • AAI clade 7-19-1-2 medoid: 3300013136 66
        • AAI clade 7-19-1-3 medoid: 3300028399 23
        • AAI clade 7-19-1-4 medoid: 3300027902 59
        • AAI clade 7-19-1-5 medoid: 3300020190 77
        • AAI clade 7-19-1-6 medoid: wastewater GEMS 3300025686 6
        • AAI clade 7-19-1-7 medoid: wastewater ye ASMAG1892
      • AAI clade 7-19-2 medoid: 3300002481 17
      • AAI clade 7-19-3 medoid: 3300013137 101
      • AAI clade 7-19-4 medoid: wastewater GEMS 3300025861 13
    • AAI clade 7-20 medoid: 3300024956 5
    • AAI clade 7-21 medoid: 3300013097 2
    • AAI clade 7-22 medoid: 3300000854 1
    • AAI clade 7-23 medoid: 3300027622 17
    • AAI clade 7-24 medoid: 3300024344 6
    • AAI clade 7-25 medoid: 3300009703 34
    • AAI clade 7-26 medoid: wastewater singleton GCA 016699405 1 ASM1669940v1 genomic
    • AAI clade 7-27 medoid: 3300002481 28
    • AAI clade 7-28 medoid: 3300017532 17
    • AAI clade 7-29 medoid: 3300027677 15
    • AAI clade 7-30 medoid: wastewater ye ASMAG324
    • AAI clade 7-31 medoid: wastewater singleton GCA 016700195 1 ASM1670019v1 genomic
    • AAI clade 7-32 medoid: 3300029821 19
    • AAI clade 7-33 medoid: 3300026512 23
    • AAI clade 7-34 medoid: 3300022902 11
    • AAI clade 7-35 medoid: 3300027677 20
    • AAI clade 7-36 medoid: wastewater singleton GCA 016716175 1 ASM1671617v1 genomic
    • AAI clade 7-37 medoid: wastewater ye ASMAG184
    • AAI clade 7-38 medoid: 3300013014 12
    • AAI clade 7-39 medoid: 3300013138 89
    • AAI clade 7-40 medoid: wastewater GEMS 3300025882 19
    • AAI clade 7-41 medoid: wastewater ye ASMAG60
    • AAI clade 7-42 medoid: wastewater ye ASMAG1291
    • AAI clade 7-43 medoid: wastewater ye ASMAG757
    • AAI clade 7-44 medoid: wastewater ye ASMAG182
    • AAI clade 7-45 medoid: wastewater ye ASMAG1409
    • AAI clade 7-46 medoid: wastewater ye ASMAG476
    • AAI clade 7-47 medoid: 3300024353 27
    • AAI clade 7-48 medoid: wastewater ye ASMAG1302
    • AAI clade 7-49 medoid: wastewater GEMS 3300012018 2
    • AAI clade 7-50 medoid: wastewater GEMS 3300013232 46
    • AAI clade 7-51 medoid: 3300018018 15
    • AAI clade 7-52 medoid: 3300027337 6
    • AAI clade 7-53 medoid: 3300013137 110
    • AAI clade 7-54 medoid: 3300027900 79
    • AAI clade 7-55 medoid: 3300027900 29
    • AAI clade 7-56 medoid: 3300027893 53
    • AAI clade 7-57 medoid: 3300021499 3
    • AAI clade 7-58 medoid: 3300017423 14
    • AAI clade 7-59 medoid: 3300027900 35
    • AAI clade 7-60 medoid: 3300027835 33
    • AAI clade 7-61 medoid: 3300027815 70
    • AAI clade 7-62 medoid: septage trim metabat 8
    • AAI clade 7-63 medoid: 3300028581 72
    • AAI clade 7-64 medoid: 3300027896 88
    • AAI clade 7-65 medoid: wastewater singleton GCA 016720205 1 ASM1672020v1 genomic
    • AAI clade 7-66 medoid: wastewater singleton GCA 016712675 1 ASM1671267v1 genomic
    • AAI clade 7-67 medoid: wastewater GEMS 3300025882 23
    • AAI clade 7-68 medoid: 3300025409 1
    • AAI clade 7-69 medoid: wastewater ye ASMAG1139
    • AAI clade 7-70 medoid: 3300019761 5
    • AAI clade 7-71 medoid: wastewater ye ASMAG896
    • AAI clade 7-72 medoid: wastewater singleton GCA 016717175 1 ASM1671717v1 genomic
    • AAI clade 7-73 medoid: 3300026382 4
    • AAI clade 7-74 medoid: wastewater ye ASMAG1891
    • AAI clade 7-75 medoid: wastewater GEMS 3300026516 18
    • AAI clade 7-76 medoid: wastewater singleton GCA 016704275 1 ASM1670427v1 genomic
    • AAI clade 7-77 medoid: wastewater ye ASMAG761
    • AAI clade 7-78 medoid: wastewater ye ASMAG306
  • AAI clade 8 medoid: human MGYG000002603
  • AAI clade 9 medoid: 3300024953 8
  • AAI clade 10 medoid: 3300017423 5
  • AAI clade 11 medoid: pig GCA 946405745 1
  • AAI clade 12 medoid: 3300006192 20
  • AAI clade 13 medoid: pig LW1 s150947 bin 23
  • AAI clade 14 medoid: dog Snoopy p1 metabat2 high PE 009
  • AAI clade 15 medoid: pig MGYG000302081
  • AAI clade 16 medoid: human MGYG000000545
  • AAI clade 17 medoid: human MGYG000003895
  • AAI clade 18 medoid: chicken MGYG000313561
  • AAI clade 19 medoid: 3300024912 1
  • AAI clade 20 medoid: human MGYG000002619
  • AAI clade 21 medoid: human MGYG000002428
  • AAI clade 22 medoid: 3300027805 13
  • AAI clade 23 medoid: chicken MGYG000314833
  • AAI clade 24 medoid: wastewater GEMS 3300027794 31
  • AAI clade 25 medoid: human MGYG000004406
  • AAI clade 26 medoid: pig MGYG000301788
  • AAI clade 27 medoid: 3300027834 52
  • AAI clade 28 medoid: 3300020389 13
  • AAI clade 29 medoid: 3300027835 270
  • AAI clade 30 medoid: 3300013004 97
  • AAI clade 31 medoid: 3300025065 6
  • AAI clade 32 medoid: human MGYG000004800
  • AAI clade 33 medoid: ruminant GCA 015060255 1
  • AAI clade 34 medoid: chicken GCA 019115885 1
  • AAI clade 35 medoid: pig SAMEA3663026 metabat2 high PE 017
  • AAI clade 36 medoid: human MGYG000000998
  • AAI clade 37 medoid: 3300012919 27
  • AAI clade 38 medoid: 3300027851 42
  • AAI clade 39 medoid: wastewater ye ASMAG566