AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: human MGYG000000946
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AAI clade 2
medoid: human MGYG000000019
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AAI clade 3
medoid: human MGYG000003370
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AAI clade 4
medoid: 3300027323 37
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AAI clade 4-1
medoid: pig MGYG000301799
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AAI clade 4-2
medoid: ruminant GCA 015062915 1
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AAI clade 4-3
medoid: wastewater GEMS 3300029252 12
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AAI clade 4-4
medoid: wastewater GEMS 3300001096 22
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AAI clade 4-4-1
medoid: wastewater GEMS 3300001096 22
4 datasets: 3300029449 9 (AAI: 74.24%), 3300029442 9 (AAI: 64.41%), wastewater GEMS 3300001096 22 (AAI: 100.0%), and wastewater GEMS 3300025638 30 (AAI: 71.91%)
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AAI clade 4-4-2
medoid: 3300017988 24
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AAI clade 4-4-3
medoid: wastewater GEMS 3300029446 15
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AAI clade 4-4-4
medoid: wastewater GEMS 3300025589 34
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AAI clade 4-4-5
medoid: wastewater GEMS 3300025740 28
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AAI clade 4-4-1
medoid: wastewater GEMS 3300001096 22
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AAI clade 4-5
medoid: human MGYG000000897
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AAI clade 4-6
medoid: 3300026266 23
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AAI clade 4-7
medoid: 3300013128 97
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AAI clade 4-8
medoid: 3300028399 54
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AAI clade 4-9
medoid: 3300017473 30
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AAI clade 4-10
medoid: 3300027721 7
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AAI clade 4-11
medoid: 3300024344 58
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AAI clade 4-12
medoid: 3300027792 19
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AAI clade 4-13
medoid: 3300024429 35
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AAI clade 4-14
medoid: 3300027323 41
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AAI clade 4-15
medoid: 3300027893 69
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AAI clade 4-16
medoid: 3300022170 6
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AAI clade 4-17
medoid: 3300026519 52
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AAI clade 4-18
medoid: 3300028398 44
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AAI clade 4-19
medoid: 3300029797 12
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AAI clade 4-20
medoid: 3300021472 22
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AAI clade 4-21
medoid: 3300028030 27
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AAI clade 4-22
medoid: 3300024054 68
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AAI clade 4-23
medoid: 3300017533 38
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AAI clade 4-24
medoid: 3300017533 44
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AAI clade 4-25
medoid: 3300014911 70
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AAI clade 4-26
medoid: 3300028032 36
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AAI clade 4-27
medoid: wastewater ye ASMAG11
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AAI clade 4-28
medoid: 3300027819 94
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AAI clade 4-29
medoid: 3300021472 50
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AAI clade 4-30
medoid: 3300025472 24
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AAI clade 4-31
medoid: 3300027896 55
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AAI clade 4-32
medoid: 3300013138 173
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AAI clade 4-33
medoid: 3300024423 13
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AAI clade 4-34
medoid: 3300028398 30
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AAI clade 4-35
medoid: human MGYG000004585
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AAI clade 4-36
medoid: wastewater GEMS 3300025611 19
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AAI clade 4-37
medoid: 3300023177 27
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AAI clade 4-38
medoid: wastewater GEMS 3300025408 22
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AAI clade 4-39
medoid: 3300026119 29
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AAI clade 4-40
medoid: 3300020417 34
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AAI clade 4-41
medoid: 3300025446 16
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AAI clade 4-42
medoid: ruminant GCA 015063105 1
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AAI clade 4-43
medoid: human MGYG000002164
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AAI clade 4-44
medoid: wastewater GEMS 3300025724 59
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AAI clade 4-1
medoid: pig MGYG000301799
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AAI clade 5
medoid: human MGYG000004185
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AAI clade 6
medoid: human MGYG000001010
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AAI clade 7
medoid: wastewater GEMS 3300025861 51
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AAI clade 8
medoid: human MGYG000002603
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AAI clade 9
medoid: 3300024953 8
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AAI clade 10
medoid: 3300017423 5
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AAI clade 11
medoid: pig GCA 946405745 1
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AAI clade 12
medoid: 3300006192 20
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AAI clade 13
medoid: pig LW1 s150947 bin 23
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AAI clade 14
medoid: dog Snoopy p1 metabat2 high PE 009
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AAI clade 15
medoid: pig MGYG000302081
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AAI clade 16
medoid: human MGYG000000545
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AAI clade 17
medoid: human MGYG000003895
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AAI clade 18
medoid: chicken MGYG000313561
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AAI clade 19
medoid: 3300024912 1
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AAI clade 20
medoid: human MGYG000002619
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AAI clade 21
medoid: human MGYG000002428
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AAI clade 22
medoid: 3300027805 13
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AAI clade 23
medoid: chicken MGYG000314833
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AAI clade 24
medoid: wastewater GEMS 3300027794 31
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AAI clade 25
medoid: human MGYG000004406
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AAI clade 26
medoid: pig MGYG000301788
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AAI clade 27
medoid: 3300027834 52
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AAI clade 28
medoid: 3300020389 13
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AAI clade 29
medoid: 3300027835 270
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AAI clade 30
medoid: 3300013004 97
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AAI clade 31
medoid: 3300025065 6
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AAI clade 32
medoid: human MGYG000004800
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AAI clade 33
medoid: ruminant GCA 015060255 1
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AAI clade 34
medoid: chicken GCA 019115885 1
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AAI clade 35
medoid: pig SAMEA3663026 metabat2 high PE 017
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AAI clade 36
medoid: human MGYG000000998
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AAI clade 37
medoid: 3300012919 27
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AAI clade 38
medoid: 3300027851 42
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AAI clade 39
medoid: wastewater ye ASMAG566