AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: human MGYG000000946
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AAI clade 2
medoid: human MGYG000000019
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AAI clade 3
medoid: human MGYG000003370
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AAI clade 4
medoid: 3300027323 37
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AAI clade 5
medoid: human MGYG000004185
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AAI clade 6
medoid: human MGYG000001010
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AAI clade 7
medoid: wastewater GEMS 3300025861 51
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AAI clade 8
medoid: human MGYG000002603
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AAI clade 9
medoid: 3300024953 8
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AAI clade 10
medoid: 3300017423 5
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AAI clade 11
medoid: pig GCA 946405745 1
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AAI clade 12
medoid: 3300006192 20
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AAI clade 13
medoid: pig LW1 s150947 bin 23
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AAI clade 14
medoid: dog Snoopy p1 metabat2 high PE 009
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AAI clade 15
medoid: pig MGYG000302081
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AAI clade 16
medoid: human MGYG000000545
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AAI clade 17
medoid: human MGYG000003895
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AAI clade 18
medoid: chicken MGYG000313561
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AAI clade 19
medoid: 3300024912 1
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AAI clade 20
medoid: human MGYG000002619
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AAI clade 21
medoid: human MGYG000002428
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AAI clade 22
medoid: 3300027805 13
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AAI clade 23
medoid: chicken MGYG000314833
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AAI clade 24
medoid: wastewater GEMS 3300027794 31
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AAI clade 25
medoid: human MGYG000004406
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AAI clade 26
medoid: pig MGYG000301788
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AAI clade 27
medoid: 3300027834 52
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AAI clade 28
medoid: 3300020389 13
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AAI clade 29
medoid: 3300027835 270
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AAI clade 30
medoid: 3300013004 97
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AAI clade 31
medoid: 3300025065 6
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AAI clade 32
medoid: human MGYG000004800
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AAI clade 33
medoid: ruminant GCA 015060255 1
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AAI clade 34
medoid: chicken GCA 019115885 1
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AAI clade 35
medoid: pig SAMEA3663026 metabat2 high PE 017
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AAI clade 36
medoid: human MGYG000000998
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AAI clade 37
medoid: 3300012919 27
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AAI clade 38
medoid: 3300027851 42
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AAI clade 39
medoid: wastewater ye ASMAG566
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AAI clade 39-1
medoid: wastewater GEMS 3300027786 25
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AAI clade 39-2
medoid: wastewater ye ASMAG566
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AAI clade 39-3
medoid: wastewater ye ASMAG309
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AAI clade 39-3-1
medoid: 3300010160 45
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AAI clade 39-3-2
medoid: 3300017480 31
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AAI clade 39-3-3
medoid: 3300027878 27
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AAI clade 39-3-4
medoid: 3300017937 6
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AAI clade 39-3-5
medoid: 3300027736 21
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AAI clade 39-3-6
medoid: 3300027897 32
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AAI clade 39-3-7
medoid: wastewater GEMS 3300003281 10
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AAI clade 39-3-8
medoid: wastewater GEMS 3300013771 17
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AAI clade 39-3-9
medoid: wastewater GEMS 3300023211 5
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AAI clade 39-3-10
medoid: wastewater GEMS 3300025691 24
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AAI clade 39-3-11
medoid: wastewater ye ASMAG1698
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AAI clade 39-3-12
medoid: wastewater ye ASMAG309
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AAI clade 39-3-12-1
medoid: wastewater singleton GCA 016710165 1 ASM1671016v1 genomic
1 dataset: wastewater singleton GCA 016710165 1 ASM1671016v1 genomic (AAI: 100.0%)
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AAI clade 39-3-12-2
medoid: wastewater singleton GCA 016713965 1 ASM1671396v1 genomic
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AAI clade 39-3-12-3
medoid: wastewater singleton GCA 016720775 1 ASM1672077v1 genomic
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AAI clade 39-3-12-4
medoid: wastewater singleton GCA 016721725 1 ASM1672172v1 genomic
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AAI clade 39-3-12-5
medoid: wastewater ye ASMAG1004
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AAI clade 39-3-12-6
medoid: wastewater ye ASMAG1587
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AAI clade 39-3-12-7
medoid: wastewater ye ASMAG623
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AAI clade 39-3-12-8
medoid: wastewater ye ASMAG503
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AAI clade 39-3-12-1
medoid: wastewater singleton GCA 016710165 1 ASM1671016v1 genomic
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AAI clade 39-3-13
medoid: wastewater singleton GCA 016715365 1 ASM1671536v1 genomic
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AAI clade 39-3-14
medoid: wastewater ye ASMAG1962
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AAI clade 39-3-1
medoid: 3300010160 45
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AAI clade 39-1
medoid: wastewater GEMS 3300027786 25