AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: human MGYG000000946
  • AAI clade 2 medoid: human MGYG000000019
  • AAI clade 3 medoid: human MGYG000003370
  • AAI clade 4 medoid: 3300027323 37
  • AAI clade 5 medoid: human MGYG000004185
  • AAI clade 6 medoid: human MGYG000001010
  • AAI clade 7 medoid: wastewater GEMS 3300025861 51
  • AAI clade 8 medoid: human MGYG000002603
  • AAI clade 9 medoid: 3300024953 8
  • AAI clade 10 medoid: 3300017423 5
  • AAI clade 11 medoid: pig GCA 946405745 1
  • AAI clade 12 medoid: 3300006192 20
  • AAI clade 13 medoid: pig LW1 s150947 bin 23
  • AAI clade 14 medoid: dog Snoopy p1 metabat2 high PE 009
  • AAI clade 15 medoid: pig MGYG000302081
  • AAI clade 16 medoid: human MGYG000000545
  • AAI clade 17 medoid: human MGYG000003895
  • AAI clade 18 medoid: chicken MGYG000313561
  • AAI clade 19 medoid: 3300024912 1
  • AAI clade 20 medoid: human MGYG000002619
  • AAI clade 21 medoid: human MGYG000002428
  • AAI clade 22 medoid: 3300027805 13
  • AAI clade 23 medoid: chicken MGYG000314833
  • AAI clade 24 medoid: wastewater GEMS 3300027794 31
  • AAI clade 25 medoid: human MGYG000004406
  • AAI clade 26 medoid: pig MGYG000301788
  • AAI clade 27 medoid: 3300027834 52
  • AAI clade 28 medoid: 3300020389 13
  • AAI clade 29 medoid: 3300027835 270
  • AAI clade 30 medoid: 3300013004 97
  • AAI clade 31 medoid: 3300025065 6
  • AAI clade 32 medoid: human MGYG000004800
  • AAI clade 33 medoid: ruminant GCA 015060255 1
  • AAI clade 34 medoid: chicken GCA 019115885 1
  • AAI clade 35 medoid: pig SAMEA3663026 metabat2 high PE 017
  • AAI clade 36 medoid: human MGYG000000998
  • AAI clade 37 medoid: 3300012919 27
  • AAI clade 38 medoid: 3300027851 42
  • AAI clade 39 medoid: wastewater ye ASMAG566
    • AAI clade 39-1 medoid: wastewater GEMS 3300027786 25
    • AAI clade 39-2 medoid: wastewater ye ASMAG566
      • AAI clade 39-2-1 medoid: 3300005662 52
      • AAI clade 39-2-2 medoid: 3300012092 6
      • AAI clade 39-2-3 medoid: 3300014050 12
      • AAI clade 39-2-4 medoid: wastewater GEMS 3300012018 8
      • AAI clade 39-2-5 medoid: wastewater ye ASMAG566
      • AAI clade 39-2-6 medoid: 3300020190 52
      • AAI clade 39-2-7 medoid: 3300020192 44
      • AAI clade 39-2-8 medoid: 3300020578 62
      • AAI clade 39-2-9 medoid: 3300023208 21
      • AAI clade 39-2-10 medoid: wastewater GEMS 3300009540 17
      • AAI clade 39-2-11 medoid: wastewater GEMS 3300012020 6
      • AAI clade 39-2-12 medoid: wastewater GEMS 3300026516 35
      • AAI clade 39-2-13 medoid: wastewater singleton GCA 016706055 1 ASM1670605v1 genomic
      • AAI clade 39-2-14 medoid: wastewater ye ASMAG1970
      • AAI clade 39-2-15 medoid: wastewater singleton GCA 016720565 1 ASM1672056v1 genomic
      • AAI clade 39-2-16 medoid: wastewater singleton GCA 016721085 1 ASM1672108v1 genomic
      • AAI clade 39-2-17 medoid: wastewater ye ASMAG1494
      • AAI clade 39-2-18 medoid: wastewater ye ASMAG1571
        1 dataset: wastewater ye ASMAG1571 (AAI: 100.0%)
    • AAI clade 39-3 medoid: wastewater ye ASMAG309