AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: human MGYG000000946
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AAI clade 2
medoid: human MGYG000000019
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AAI clade 3
medoid: human MGYG000003370
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AAI clade 4
medoid: 3300027323 37
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AAI clade 5
medoid: human MGYG000004185
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AAI clade 6
medoid: human MGYG000001010
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AAI clade 7
medoid: wastewater GEMS 3300025861 51
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AAI clade 8
medoid: human MGYG000002603
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AAI clade 9
medoid: 3300024953 8
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AAI clade 10
medoid: 3300017423 5
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AAI clade 11
medoid: pig GCA 946405745 1
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AAI clade 12
medoid: 3300006192 20
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AAI clade 13
medoid: pig LW1 s150947 bin 23
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AAI clade 14
medoid: dog Snoopy p1 metabat2 high PE 009
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AAI clade 15
medoid: pig MGYG000302081
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AAI clade 16
medoid: human MGYG000000545
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AAI clade 17
medoid: human MGYG000003895
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AAI clade 18
medoid: chicken MGYG000313561
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AAI clade 19
medoid: 3300024912 1
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AAI clade 20
medoid: human MGYG000002619
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AAI clade 21
medoid: human MGYG000002428
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AAI clade 22
medoid: 3300027805 13
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AAI clade 23
medoid: chicken MGYG000314833
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AAI clade 24
medoid: wastewater GEMS 3300027794 31
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AAI clade 25
medoid: human MGYG000004406
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AAI clade 26
medoid: pig MGYG000301788
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AAI clade 27
medoid: 3300027834 52
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AAI clade 28
medoid: 3300020389 13
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AAI clade 29
medoid: 3300027835 270
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AAI clade 30
medoid: 3300013004 97
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AAI clade 31
medoid: 3300025065 6
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AAI clade 32
medoid: human MGYG000004800
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AAI clade 33
medoid: ruminant GCA 015060255 1
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AAI clade 34
medoid: chicken GCA 019115885 1
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AAI clade 35
medoid: pig SAMEA3663026 metabat2 high PE 017
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AAI clade 36
medoid: human MGYG000000998
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AAI clade 37
medoid: 3300012919 27
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AAI clade 38
medoid: 3300027851 42
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AAI clade 38-1
medoid: 3300027851 42
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AAI clade 38-2
medoid: 3300027742 28
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AAI clade 38-3
medoid: wastewater GEMS 3300025678 39
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AAI clade 38-4
medoid: wastewater GEMS 3300025708 15
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AAI clade 38-5
medoid: wastewater GEMS 3300025678 37
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AAI clade 38-5-1
medoid: wastewater GEMS 3300009767 48
3 datasets: 3300000426 7 (AAI: 56.91%), wastewater GEMS 3300009767 48 (AAI: 100.0%), and wastewater GEMS 3300028640 20 (AAI: 80.87%)
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AAI clade 38-5-2
medoid: wastewater GEMS 3300025678 37
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AAI clade 38-5-3
medoid: wastewater GEMS 3300025702 21
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AAI clade 38-5-4
medoid: wastewater GEMS 3300028567 66
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AAI clade 38-5-5
medoid: wastewater ye ASMAG1883
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AAI clade 38-5-1
medoid: wastewater GEMS 3300009767 48
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AAI clade 38-6
medoid: 3300017451 12
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AAI clade 38-7
medoid: wastewater singleton GCA 016703025 1 ASM1670302v1 genomic
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AAI clade 38-8
medoid: wastewater GEMS 3300009540 11
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AAI clade 38-9
medoid: wastewater ye ASMAG1743
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AAI clade 38-10
medoid: wastewater singleton GCA 016714465 1 ASM1671446v1 genomic
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AAI clade 38-11
medoid: wastewater ye ASMAG102
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AAI clade 38-12
medoid: wastewater singleton GCA 016718485 1 ASM1671848v1 genomic
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AAI clade 38-13
medoid: wastewater GEMS 3300005669 3
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AAI clade 38-14
medoid: wastewater ye ASMAG1944
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AAI clade 38-15
medoid: 3300020477 63
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AAI clade 38-16
medoid: wastewater singleton GCA 016699425 1 ASM1669942v1 genomic
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AAI clade 38-1
medoid: 3300027851 42
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AAI clade 39
medoid: wastewater ye ASMAG566