AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
-
AAI clade 1
medoid: human MGYG000000946
-
AAI clade 2
medoid: human MGYG000000019
-
AAI clade 3
medoid: human MGYG000003370
-
AAI clade 4
medoid: 3300027323 37
-
AAI clade 5
medoid: human MGYG000004185
-
AAI clade 6
medoid: human MGYG000001010
-
AAI clade 7
medoid: wastewater GEMS 3300025861 51
-
AAI clade 8
medoid: human MGYG000002603
-
AAI clade 9
medoid: 3300024953 8
-
AAI clade 10
medoid: 3300017423 5
-
AAI clade 11
medoid: pig GCA 946405745 1
-
AAI clade 12
medoid: 3300006192 20
-
AAI clade 13
medoid: pig LW1 s150947 bin 23
-
AAI clade 14
medoid: dog Snoopy p1 metabat2 high PE 009
-
AAI clade 15
medoid: pig MGYG000302081
-
AAI clade 16
medoid: human MGYG000000545
-
AAI clade 17
medoid: human MGYG000003895
-
AAI clade 18
medoid: chicken MGYG000313561
-
AAI clade 19
medoid: 3300024912 1
-
AAI clade 20
medoid: human MGYG000002619
-
AAI clade 21
medoid: human MGYG000002428
-
AAI clade 22
medoid: 3300027805 13
-
AAI clade 23
medoid: chicken MGYG000314833
-
AAI clade 24
medoid: wastewater GEMS 3300027794 31
-
AAI clade 25
medoid: human MGYG000004406
-
AAI clade 26
medoid: pig MGYG000301788
-
AAI clade 27
medoid: 3300027834 52
-
AAI clade 28
medoid: 3300020389 13
-
AAI clade 29
medoid: 3300027835 270
-
AAI clade 30
medoid: 3300013004 97
-
AAI clade 31
medoid: 3300025065 6
-
AAI clade 32
medoid: human MGYG000004800
-
AAI clade 33
medoid: ruminant GCA 015060255 1
-
AAI clade 34
medoid: chicken GCA 019115885 1
-
AAI clade 35
medoid: pig SAMEA3663026 metabat2 high PE 017
-
AAI clade 36
medoid: human MGYG000000998
-
AAI clade 36-1
medoid: pig F5457 bin 29
-
AAI clade 36-2
medoid: human MGYG000000998
-
AAI clade 36-3
medoid: 3300027712 50
-
AAI clade 36-4
medoid: wastewater ye ASMAG1072
-
AAI clade 36-5
medoid: wastewater singleton GCA 016700375 1 ASM1670037v1 genomic
-
AAI clade 36-5-1
medoid: 3300009083 251
-
AAI clade 36-5-2
medoid: wastewater ye ASMAG1929
-
AAI clade 36-5-3
medoid: 3300013138 230
-
AAI clade 36-5-4
medoid: 3300014199 30
-
AAI clade 36-5-5
medoid: 3300017485 8
-
AAI clade 36-5-6
medoid: 3300017929 31
-
AAI clade 36-5-7
medoid: 3300018046 24
-
AAI clade 36-5-8
medoid: 3300020186 46
-
AAI clade 36-5-9
medoid: 3300020219 57
-
AAI clade 36-5-10
medoid: 3300028569 78
-
AAI clade 36-5-11
medoid: 3300027749 59
-
AAI clade 36-5-12
medoid: wastewater GEMS 3300001594 55
-
AAI clade 36-5-13
medoid: wastewater singleton GCA 016700375 1 ASM1670037v1 genomic
-
AAI clade 36-5-14
medoid: wastewater GEMS 3300026283 20
-
AAI clade 36-5-15
medoid: wastewater singleton GCA 016700315 1 ASM1670031v1 genomic
-
AAI clade 36-5-16
medoid: wastewater ye ASMAG418
-
AAI clade 36-5-17
medoid: wastewater ye ASMAG1478
-
AAI clade 36-5-18
medoid: wastewater ye ASMAG1562
-
AAI clade 36-5-19
medoid: wastewater ye ASMAG165
1 dataset: wastewater ye ASMAG165 (AAI: 100.0%)
-
AAI clade 36-5-20
medoid: wastewater ye ASMAG1808
-
AAI clade 36-5-21
medoid: wastewater ye ASMAG1922
-
AAI clade 36-5-22
medoid: wastewater ye ASMAG658
-
AAI clade 36-5-23
medoid: wastewater ye ASMAG659
-
AAI clade 36-5-24
medoid: wastewater ye ASMAG801
-
AAI clade 36-5-1
medoid: 3300009083 251
-
AAI clade 36-1
medoid: pig F5457 bin 29
-
AAI clade 37
medoid: 3300012919 27
-
AAI clade 38
medoid: 3300027851 42
-
AAI clade 39
medoid: wastewater ye ASMAG566