AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

• AAI clade 1 medoid: human MGYG000000946
• AAI clade 2 medoid: human MGYG000000019
• AAI clade 3 medoid: human MGYG000003370
• AAI clade 4 medoid: 3300027323 37
• AAI clade 5 medoid: human MGYG000004185
• AAI clade 6 medoid: human MGYG000001010
• AAI clade 7 medoid: wastewater GEMS 3300025861 51
• AAI clade 8 medoid: human MGYG000002603
• AAI clade 9 medoid: 3300024953 8
• AAI clade 10 medoid: 3300017423 5
• AAI clade 11 medoid: pig GCA 946405745 1
• AAI clade 12 medoid: 3300006192 20
• AAI clade 13 medoid: pig LW1 s150947 bin 23
• AAI clade 14 medoid: dog Snoopy p1 metabat2 high PE 009
• AAI clade 15 medoid: pig MGYG000302081
• AAI clade 16 medoid: human MGYG000000545
• AAI clade 17 medoid: human MGYG000003895
• AAI clade 18 medoid: chicken MGYG000313561
• AAI clade 19 medoid: 3300024912 1
• AAI clade 20 medoid: human MGYG000002619
• AAI clade 21 medoid: human MGYG000002428
• AAI clade 22 medoid: 3300027805 13
• AAI clade 23 medoid: chicken MGYG000314833
• AAI clade 24 medoid: wastewater GEMS 3300027794 31
• AAI clade 25 medoid: human MGYG000004406
• AAI clade 26 medoid: pig MGYG000301788
• AAI clade 27 medoid: 3300027834 52
• AAI clade 28 medoid: 3300020389 13
• AAI clade 29 medoid: 3300027835 270
• AAI clade 30 medoid: 3300013004 97
• AAI clade 31 medoid: 3300025065 6
• AAI clade 32 medoid: human MGYG000004800
• AAI clade 33 medoid: ruminant GCA 015060255 1
• AAI clade 34 medoid: chicken GCA 019115885 1
• AAI clade 35 medoid: pig SAMEA3663026 metabat2 high PE 017
  • AAI clade 35-1 medoid: human MGYG000004493
  • AAI clade 35-2 medoid: pig MGYG000302013
  • AAI clade 35-3 medoid: 3300027851 48
  • AAI clade 35-4 medoid: wastewater GEMS 3300025597 35
    • AAI clade 35-4-1 medoid: wastewater GEMS 3300025605 15
    • AAI clade 35-4-2 medoid: 3300014655 8
    • AAI clade 35-4-3 medoid: wastewater GEMS 3300025393 17
    • AAI clade 35-4-4 medoid: wastewater GEMS 3300025597 35
      • AAI clade 35-4-4-1 medoid: 3300013137 55
      • AAI clade 35-4-4-2 medoid: 3300018024 23
      • AAI clade 35-4-4-3 medoid: septage norm metabat 40
      • AAI clade 35-4-4-4 medoid: wastewater GEMS 3300025597 35
      • AAI clade 35-4-4-5 medoid: wastewater GEMS 3300000558 50
        1 dataset: wastewater GEMS 3300000558 50 (AAI: 100.0%)
      • AAI clade 35-4-4-6 medoid: wastewater GEMS 3300001095 17
      • AAI clade 35-4-4-7 medoid: wastewater GEMS 3300006517 6
      • AAI clade 35-4-4-8 medoid: wastewater GEMS 3300009769 39
      • AAI clade 35-4-4-9 medoid: wastewater GEMS 3300028644 25
    • AAI clade 35-4-5 medoid: wastewater GEMS 3300025855 40
    • AAI clade 35-4-6 medoid: 3300014655 7
    • AAI clade 35-4-7 medoid: 3300027822 51
    • AAI clade 35-4-8 medoid: 3300027885 15
    • AAI clade 35-4-9 medoid: pig S96308A bin 30
    • AAI clade 35-4-10 medoid: wastewater GEMS 3300025740 20
    • AAI clade 35-4-11 medoid: wastewater ye ASMAG820
  • AAI clade 35-5 medoid: pig MGYG000302162
• AAI clade 36 medoid: human MGYG000000998
• AAI clade 37 medoid: 3300012919 27
• AAI clade 38 medoid: 3300027851 42
• AAI clade 39 medoid: wastewater ye ASMAG566