AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: human MGYG000000946
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AAI clade 2
medoid: human MGYG000000019
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AAI clade 3
medoid: human MGYG000003370
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AAI clade 4
medoid: 3300027323 37
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AAI clade 5
medoid: human MGYG000004185
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AAI clade 6
medoid: human MGYG000001010
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AAI clade 7
medoid: wastewater GEMS 3300025861 51
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AAI clade 8
medoid: human MGYG000002603
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AAI clade 9
medoid: 3300024953 8
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AAI clade 10
medoid: 3300017423 5
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AAI clade 11
medoid: pig GCA 946405745 1
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AAI clade 12
medoid: 3300006192 20
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AAI clade 13
medoid: pig LW1 s150947 bin 23
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AAI clade 14
medoid: dog Snoopy p1 metabat2 high PE 009
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AAI clade 15
medoid: pig MGYG000302081
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AAI clade 16
medoid: human MGYG000000545
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AAI clade 17
medoid: human MGYG000003895
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AAI clade 18
medoid: chicken MGYG000313561
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AAI clade 19
medoid: 3300024912 1
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AAI clade 20
medoid: human MGYG000002619
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AAI clade 21
medoid: human MGYG000002428
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AAI clade 22
medoid: 3300027805 13
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AAI clade 23
medoid: chicken MGYG000314833
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AAI clade 24
medoid: wastewater GEMS 3300027794 31
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AAI clade 25
medoid: human MGYG000004406
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AAI clade 26
medoid: pig MGYG000301788
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AAI clade 27
medoid: 3300027834 52
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AAI clade 28
medoid: 3300020389 13
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AAI clade 29
medoid: 3300027835 270
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AAI clade 30
medoid: 3300013004 97
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AAI clade 31
medoid: 3300025065 6
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AAI clade 32
medoid: human MGYG000004800
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AAI clade 33
medoid: ruminant GCA 015060255 1
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AAI clade 34
medoid: chicken GCA 019115885 1
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AAI clade 34-1
medoid: pig S127912A bin 37
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AAI clade 34-2
medoid: human MGYG000003818
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AAI clade 34-3
medoid: human MGYG000000399
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AAI clade 34-4
medoid: chicken GCA 019113275 1
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AAI clade 34-5
medoid: chicken MGYG000317399
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AAI clade 34-6
medoid: chicken GCA 019115885 1
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AAI clade 34-7
medoid: pig Tibetan s3800 19M bin 22
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AAI clade 34-8
medoid: chicken MGYG000311580
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AAI clade 34-9
medoid: chicken MGYG000317413
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AAI clade 34-10
medoid: human MGYG000003216
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AAI clade 34-11
medoid: human MGYG000001853
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AAI clade 34-12
medoid: pig Duroc Low8 bin 40
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AAI clade 34-13
medoid: human MGYG000000527
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AAI clade 34-13-1
medoid: human MGYG000000459
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AAI clade 34-13-2
medoid: human MGYG000000527
4 datasets: human MGYG000000527 (AAI: 100.0%), human MGYG000000679 (AAI: 95.08%), human MGYG000003519 (AAI: 76.96%), and pig S38404A bin 19 (AAI: 88.27%)
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AAI clade 34-13-3
medoid: human MGYG000001941
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AAI clade 34-13-4
medoid: human MGYG000004426
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AAI clade 34-13-5
medoid: chicken MGYG000317109
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AAI clade 34-13-6
medoid: human MGYG000000407
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AAI clade 34-13-7
medoid: human MGYG000001845
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AAI clade 34-13-8
medoid: pig Duroc High8 bin 42
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AAI clade 34-13-9
medoid: pig GCA 018384735 1
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AAI clade 34-13-10
medoid: pig MGYG000301957
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AAI clade 34-13-11
medoid: pig MGYG000302028
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AAI clade 34-13-12
medoid: ruminant GCA 015055535 1
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AAI clade 34-13-1
medoid: human MGYG000000459
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AAI clade 34-14
medoid: human MGYG000003849
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AAI clade 34-15
medoid: human MGYG000000751
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AAI clade 34-16
medoid: chicken MGYG000317429
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AAI clade 34-17
medoid: human MGYG000003549
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AAI clade 34-18
medoid: human MGYG000000749
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AAI clade 34-19
medoid: chicken MGYG000310747
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AAI clade 34-20
medoid: human MGYG000003459
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AAI clade 34-21
medoid: ruminant GCA 015055655 1
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AAI clade 34-22
medoid: chicken MGYG000316765
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AAI clade 34-1
medoid: pig S127912A bin 37
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AAI clade 35
medoid: pig SAMEA3663026 metabat2 high PE 017
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AAI clade 36
medoid: human MGYG000000998
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AAI clade 37
medoid: 3300012919 27
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AAI clade 38
medoid: 3300027851 42
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AAI clade 39
medoid: wastewater ye ASMAG566