AAI clade 32-2-25-5 | MiGA Online

AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

AAI clade 1 medoid: human MGYG000000946
AAI clade 2 medoid: human MGYG000000019
AAI clade 3 medoid: human MGYG000003370
AAI clade 4 medoid: 3300027323 37
AAI clade 5 medoid: human MGYG000004185
AAI clade 6 medoid: human MGYG000001010
AAI clade 7 medoid: wastewater GEMS 3300025861 51
AAI clade 8 medoid: human MGYG000002603
AAI clade 9 medoid: 3300024953 8
AAI clade 10 medoid: 3300017423 5
AAI clade 11 medoid: pig GCA 946405745 1
AAI clade 12 medoid: 3300006192 20
AAI clade 13 medoid: pig LW1 s150947 bin 23
AAI clade 14 medoid: dog Snoopy p1 metabat2 high PE 009
AAI clade 15 medoid: pig MGYG000302081
AAI clade 16 medoid: human MGYG000000545
AAI clade 17 medoid: human MGYG000003895
AAI clade 18 medoid: chicken MGYG000313561
AAI clade 19 medoid: 3300024912 1
AAI clade 20 medoid: human MGYG000002619
AAI clade 21 medoid: human MGYG000002428
AAI clade 22 medoid: 3300027805 13
AAI clade 23 medoid: chicken MGYG000314833
AAI clade 24 medoid: wastewater GEMS 3300027794 31
AAI clade 25 medoid: human MGYG000004406
AAI clade 26 medoid: pig MGYG000301788
AAI clade 27 medoid: 3300027834 52
AAI clade 28 medoid: 3300020389 13
AAI clade 29 medoid: 3300027835 270
AAI clade 30 medoid: 3300013004 97
AAI clade 31 medoid: 3300025065 6
AAI clade 32 medoid: human MGYG000004800
- AAI clade 32-1 medoid: chicken MGYG000316779
- AAI clade 32-2 medoid: chicken MGYG000315424
  - AAI clade 32-2-1 medoid: chicken MGYG000318391
  - AAI clade 32-2-2 medoid: chicken MGYG000308736
  - AAI clade 32-2-3 medoid: chicken MGYG000315424
  - AAI clade 32-2-4 medoid: human MGYG000004477
  - AAI clade 32-2-5 medoid: human MGYG000000372
  - AAI clade 32-2-6 medoid: human MGYG000002773
  - AAI clade 32-2-7 medoid: human MGYG000004178
  - AAI clade 32-2-8 medoid: pig F4390 bin 43
  - AAI clade 32-2-9 medoid: pig MGYG000302241
  - AAI clade 32-2-10 medoid: pig F4404 bin 13
  - AAI clade 32-2-11 medoid: 3300009702 145
  - AAI clade 32-2-12 medoid: 3300014060 53
  - AAI clade 32-2-13 medoid: 3300021507 15
  - AAI clade 32-2-14 medoid: 3300027835 165
  - AAI clade 32-2-15 medoid: chicken MGYG000319732
  - AAI clade 32-2-16 medoid: chicken MGYG000317553
  - AAI clade 32-2-17 medoid: human MGYG000001175
  - AAI clade 32-2-18 medoid: chicken MGYG000313930
  - AAI clade 32-2-19 medoid: human MGYG000004904
  - AAI clade 32-2-20 medoid: human MGYG000002571
  - AAI clade 32-2-21 medoid: pig LW1 s151246 bin 30
  - AAI clade 32-2-22 medoid: human MGYG000002798
  - AAI clade 32-2-23 medoid: pig SAMEA3663057 metabat2 high PE 009
  - AAI clade 32-2-24 medoid: pig F5163 bin 13
  - AAI clade 32-2-25 medoid: pig S191108A bin 24
    
    AAI clade 32-2-25-1 medoid: pig W5021 bin 81
    
    AAI clade 32-2-25-2 medoid: pig F4660 bin 31
    
    AAI clade 32-2-25-3 medoid: pig S191108A bin 24
    
    AAI clade 32-2-25-4 medoid: pig F5352 bin 33
    
    AAI clade 32-2-25-5 medoid: pig SAMEA3663246 metabat2 low PE 010
    
    1 dataset: pig SAMEA3663246 metabat2 low PE 010 (AAI: 100.0%)
    
    AAI clade 32-2-25-6 medoid: ruminant GCA 015056485 1
  - AAI clade 32-2-26 medoid: pig F5021 bin 9
  - AAI clade 32-2-27 medoid: wastewater GEMS 3300025859 67
  - AAI clade 32-2-28 medoid: wastewater GEMS 3300028627 32
  - AAI clade 32-2-29 medoid: wastewater ye ASMAG299
AAI clade 33 medoid: ruminant GCA 015060255 1
AAI clade 34 medoid: chicken GCA 019115885 1
AAI clade 35 medoid: pig SAMEA3663026 metabat2 high PE 017
AAI clade 36 medoid: human MGYG000000998
AAI clade 37 medoid: 3300012919 27
AAI clade 38 medoid: 3300027851 42
AAI clade 39 medoid: wastewater ye ASMAG566

AAI-based medoid clustering

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