AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: human MGYG000000946
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AAI clade 2
medoid: human MGYG000000019
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AAI clade 3
medoid: human MGYG000003370
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AAI clade 4
medoid: 3300027323 37
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AAI clade 5
medoid: human MGYG000004185
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AAI clade 6
medoid: human MGYG000001010
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AAI clade 7
medoid: wastewater GEMS 3300025861 51
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AAI clade 8
medoid: human MGYG000002603
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AAI clade 9
medoid: 3300024953 8
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AAI clade 10
medoid: 3300017423 5
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AAI clade 11
medoid: pig GCA 946405745 1
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AAI clade 12
medoid: 3300006192 20
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AAI clade 13
medoid: pig LW1 s150947 bin 23
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AAI clade 14
medoid: dog Snoopy p1 metabat2 high PE 009
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AAI clade 15
medoid: pig MGYG000302081
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AAI clade 16
medoid: human MGYG000000545
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AAI clade 17
medoid: human MGYG000003895
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AAI clade 18
medoid: chicken MGYG000313561
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AAI clade 19
medoid: 3300024912 1
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AAI clade 20
medoid: human MGYG000002619
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AAI clade 21
medoid: human MGYG000002428
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AAI clade 22
medoid: 3300027805 13
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AAI clade 23
medoid: chicken MGYG000314833
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AAI clade 24
medoid: wastewater GEMS 3300027794 31
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AAI clade 25
medoid: human MGYG000004406
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AAI clade 26
medoid: pig MGYG000301788
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AAI clade 27
medoid: 3300027834 52
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AAI clade 28
medoid: 3300020389 13
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AAI clade 29
medoid: 3300027835 270
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AAI clade 30
medoid: 3300013004 97
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AAI clade 31
medoid: 3300025065 6
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AAI clade 32
medoid: human MGYG000004800
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AAI clade 32-1
medoid: chicken MGYG000316779
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AAI clade 32-1-1
medoid: human MGYG000004005
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AAI clade 32-1-2
medoid: chicken MGYG000316779
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AAI clade 32-1-2-1
medoid: chicken MGYG000316779
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AAI clade 32-1-2-1-1
medoid: chicken MGYG000316779
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AAI clade 32-1-2-1-1-1
medoid: chicken MGYG000315460
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AAI clade 32-1-2-1-1-2
medoid: 3300027819 107
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AAI clade 32-1-2-1-1-3
medoid: chicken MGYG000316779
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AAI clade 32-1-2-1-1-3-1
medoid: wastewater GEMS 3300025691 76
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AAI clade 32-1-2-1-1-3-2
medoid: chicken MGYG000316779
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AAI clade 32-1-2-1-1-3-2-1
medoid: 3300017533 16
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AAI clade 32-1-2-1-1-3-2-2
medoid: 3300022225 35
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AAI clade 32-1-2-1-1-3-2-3
medoid: chicken MGYG000319491
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AAI clade 32-1-2-1-1-3-2-4
medoid: chicken MGYG000311281
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AAI clade 32-1-2-1-1-3-2-5
medoid: chicken MGYG000311519
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AAI clade 32-1-2-1-1-3-2-6
medoid: chicken MGYG000313813
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AAI clade 32-1-2-1-1-3-2-7
medoid: chicken MGYG000314243
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AAI clade 32-1-2-1-1-3-2-8
medoid: chicken MGYG000315636
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AAI clade 32-1-2-1-1-3-2-9
medoid: chicken MGYG000315781
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AAI clade 32-1-2-1-1-3-2-10
medoid: chicken MGYG000316779
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AAI clade 32-1-2-1-1-3-2-11
medoid: chicken MGYG000317920
1 dataset: chicken MGYG000317920 (AAI: 100.0%)
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AAI clade 32-1-2-1-1-3-2-12
medoid: chicken MGYG000318873
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AAI clade 32-1-2-1-1-3-2-13
medoid: chicken MGYG000320177
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AAI clade 32-1-2-1-1-3-2-14
medoid: chicken MGYG000320303
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AAI clade 32-1-2-1-1-3-2-15
medoid: chicken MGYG000320382
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AAI clade 32-1-2-1-1-3-2-16
medoid: chicken MGYG000320704
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AAI clade 32-1-2-1-1-3-2-17
medoid: human MGYG000000375
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AAI clade 32-1-2-1-1-3-2-18
medoid: human MGYG000004800
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AAI clade 32-1-2-1-1-3-2-19
medoid: human MGYG000004073
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AAI clade 32-1-2-1-1-3-2-20
medoid: human MGYG000004458
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AAI clade 32-1-2-1-1-3-2-21
medoid: pig F5560 bin 62
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AAI clade 32-1-2-1-1-3-2-22
medoid: pig LW2 s126610 bin 17
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AAI clade 32-1-2-1-1-3-2-23
medoid: wastewater GEMS 3300000568 53
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AAI clade 32-1-2-1-1-3-2-24
medoid: wastewater GEMS 3300025597 21
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AAI clade 32-1-2-1-1-3-2-25
medoid: wastewater GEMS 3300025713 35
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AAI clade 32-1-2-1-1-3-2-26
medoid: wastewater ye ASMAG1934
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AAI clade 32-1-2-1-1-3-2-1
medoid: 3300017533 16
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AAI clade 32-1-2-1-1-3-1
medoid: wastewater GEMS 3300025691 76
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AAI clade 32-1-2-1-1-4
medoid: pig MGYG000301414
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AAI clade 32-1-2-1-1-1
medoid: chicken MGYG000315460
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AAI clade 32-1-2-1-2
medoid: human MGYG000003974
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AAI clade 32-1-2-1-3
medoid: human MGYG000003481
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AAI clade 32-1-2-1-1
medoid: chicken MGYG000316779
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AAI clade 32-1-2-2
medoid: human MGYG000002581
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AAI clade 32-1-2-1
medoid: chicken MGYG000316779
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AAI clade 32-1-1
medoid: human MGYG000004005
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AAI clade 32-2
medoid: chicken MGYG000315424
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AAI clade 32-1
medoid: chicken MGYG000316779
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AAI clade 33
medoid: ruminant GCA 015060255 1
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AAI clade 34
medoid: chicken GCA 019115885 1
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AAI clade 35
medoid: pig SAMEA3663026 metabat2 high PE 017
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AAI clade 36
medoid: human MGYG000000998
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AAI clade 37
medoid: 3300012919 27
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AAI clade 38
medoid: 3300027851 42
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AAI clade 39
medoid: wastewater ye ASMAG566