AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: human MGYG000000946
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AAI clade 2
medoid: human MGYG000000019
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AAI clade 3
medoid: human MGYG000003370
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AAI clade 4
medoid: 3300027323 37
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AAI clade 5
medoid: human MGYG000004185
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AAI clade 6
medoid: human MGYG000001010
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AAI clade 7
medoid: wastewater GEMS 3300025861 51
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AAI clade 8
medoid: human MGYG000002603
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AAI clade 9
medoid: 3300024953 8
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AAI clade 10
medoid: 3300017423 5
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AAI clade 11
medoid: pig GCA 946405745 1
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AAI clade 12
medoid: 3300006192 20
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AAI clade 13
medoid: pig LW1 s150947 bin 23
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AAI clade 14
medoid: dog Snoopy p1 metabat2 high PE 009
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AAI clade 15
medoid: pig MGYG000302081
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AAI clade 16
medoid: human MGYG000000545
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AAI clade 17
medoid: human MGYG000003895
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AAI clade 18
medoid: chicken MGYG000313561
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AAI clade 19
medoid: 3300024912 1
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AAI clade 20
medoid: human MGYG000002619
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AAI clade 21
medoid: human MGYG000002428
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AAI clade 22
medoid: 3300027805 13
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AAI clade 23
medoid: chicken MGYG000314833
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AAI clade 24
medoid: wastewater GEMS 3300027794 31
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AAI clade 25
medoid: human MGYG000004406
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AAI clade 26
medoid: pig MGYG000301788
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AAI clade 27
medoid: 3300027834 52
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AAI clade 28
medoid: 3300020389 13
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AAI clade 29
medoid: 3300027835 270
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AAI clade 30
medoid: 3300013004 97
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AAI clade 30-1
medoid: 3300013004 97
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AAI clade 30-2
medoid: 3300013126 55
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AAI clade 30-2-1
medoid: 3300027155 5
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AAI clade 30-2-2
medoid: 3300027780 15
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AAI clade 30-2-3
medoid: 3300013014 66
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AAI clade 30-2-4
medoid: 3300014957 2
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AAI clade 30-2-5
medoid: 3300013014 53
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AAI clade 30-2-6
medoid: 3300028559 50
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AAI clade 30-2-7
medoid: 3300014720 63
4 datasets: 3300010368 28 (AAI: 79.01%), 3300013004 61 (AAI: 62.72%), 3300014720 63 (AAI: 100.0%), and 3300027734 36 (AAI: 84.76%)
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AAI clade 30-2-8
medoid: 3300012184 5
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AAI clade 30-2-9
medoid: 3300020403 19
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AAI clade 30-2-10
medoid: 3300013004 58
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AAI clade 30-2-11
medoid: 3300013126 55
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AAI clade 30-2-12
medoid: 3300027797 39
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AAI clade 30-2-13
medoid: 3300017505 9
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AAI clade 30-2-14
medoid: 3300017526 24
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AAI clade 30-2-15
medoid: 3300021091 63
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AAI clade 30-2-16
medoid: 3300020204 63
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AAI clade 30-2-17
medoid: 3300024054 69
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AAI clade 30-2-18
medoid: 3300027143 4
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AAI clade 30-2-19
medoid: wastewater singleton GCA 016700055 1 ASM1670005v1 genomic
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AAI clade 30-2-20
medoid: wastewater ye ASMAG82
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AAI clade 30-2-1
medoid: 3300027155 5
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AAI clade 30-1
medoid: 3300013004 97
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AAI clade 31
medoid: 3300025065 6
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AAI clade 32
medoid: human MGYG000004800
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AAI clade 33
medoid: ruminant GCA 015060255 1
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AAI clade 34
medoid: chicken GCA 019115885 1
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AAI clade 35
medoid: pig SAMEA3663026 metabat2 high PE 017
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AAI clade 36
medoid: human MGYG000000998
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AAI clade 37
medoid: 3300012919 27
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AAI clade 38
medoid: 3300027851 42
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AAI clade 39
medoid: wastewater ye ASMAG566